gi_545778205_gb_U000_76

cmsearch-Rfam

Family :

HPnc0260

Id:

RF02194

Type:

Gene; antisense;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

118.4

E-value:

3e-17

From sequence:

1746716

To sequence:

1746554

Alignments:

                                                             v          v                                        NC
                               :::::::::::::::::::::::<<<---<<<<______>>>>--->>>.....,,,,,,,,,,,,,,,,<<<._______ CS
               RF02194       1 aGUAuuAaAgUUUuaAagggcuuuaaAaucguuaUuugaaacgcGuuua.....aUAauUUUUuAaauuAuuu.AUAaAGA 75     
                               +GUA+ AAAGUU   A++G   UU::  U: U:AU++  :A :CG+::A     + AAU+UUUUAA  UAU:: AUA+AGA
  gi_545778205_gb_U000 1746716 UGUAACAAAGUUGCCAUAGCGAUUCUCCUUCUGAUAACGCAUACGAAGAcagugUAAAUCUUUUAACGUAUUGgAUACAGA 1746636
                               *************************************************7776655************************* PP

                                                                                                                 NC
                               __>>>----.---------------------------------<<<<<<---<<-<<<<_______>>>>>>->>>>>>:: CS
               RF02194      76 ugaaaAAcu.uGaaAAAAaUGaGAAuuagAAaUgaAGaaAaAAUgGuGGgCcCGAgUGGACUCGAACCAcCGACCaCuACC 155    
                                 ::AAAC+ +G  AAAAA GAGAA++ +A AU+AAGAAAA  U:G:G:G+CCGAGUGGACUCGAACCACCGA:C:C:ACC
  gi_545778205_gb_U000 1746635 GAAGAAACAgAGGGAAAAAGGAGAAGACCAGAUUAAGAAAAUCUGGUGCGUCCGAGUGGACUCGAACCACCGACCCCCACC 1746555
                               ********97666666689************************************************************** PP

                                 NC
                               : CS
               RF02194     156 A 156    
                               A
  gi_545778205_gb_U000 1746554 A 1746554
                               * PP

RNAfold

>gi_545778205_gb_U000_76
GGUGGGGGUCGGUGGUUCGAGUCCACUCGGACGCACCAGAUUUUCUUAAU
CUGGUCUUCUCCUUUUUCCCUCUGUUUCUUCUCUGUAUCCAAUACGUUAA
AAGAUUUACACUGUCUUCGUAUGCGUUAUCAGAAGGAGAAUCGCUAUGGC
AACUUUGUUACA
...(((((...(((.((((((....)))))))))((((((((.....))))))))............)))))((.((((((((((((....(((((....(((((.......))))))))))....)).))).))))))).))...(((((....))))).. (-41.40)

Length sequence

: 162

Length match:

161