gi_545778205_gb_U000_80

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

216.9

E-value:

6.6e-55

From sequence:

1634542

To sequence:

1634344

Alignments:

                                                                                                                 NC
                               :::::::<--<---<-<_________>->---->-->-------------------------(((--((,,,<-<<--<<< CS
               RF02111       1 UGAAaGAcacagAaGCggAAAaAcuGcuCCggauuugggaGguagAAgaAaCaaaaaAcAuuCuGAUGCAGguAGcCAGug 81     
                               UGAA GA:AC:GAAGC:GAAAAACUG:UCCGGA:++:GGAGG++GAAGAAACAAAAAACA++C:GAUGCAGG:AGCCAGU:
  gi_545778205_gb_U000 1634542 UGAAGGAUACGGAAGCAGAAAAACUGUUCCGGAUCCGGGAGGCGGAAGAAACAAAAAACAACCUGAUGCAGGUAGCCAGUG 1634462
                               ********************************************************************************* PP

                                                                                                                 NC
                               <_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::.:::::::: CS
               RF02111      82 AGcAUAUcgCgCuaCUuCAgGAUGcUGUAGAUCcGgAgAucGCaACaGAgGAAGAaaCaUugUUGCUGGaAg.aUGGAAgA 161    
                               AGCAUAU:GCGC+:CUUCA:GAUGCUG AGAUC:GGA+AU+GCAAC:GAGGAAGAAA +U+GUUGCUGGAAG AUGGAA+A
  gi_545778205_gb_U000 1634461 AGCAUAUUGCGCCGCUUCAGGAUGCUGCAGAUCUGGAAAUUGCAACGGAGGAAGAAAUCUCGUUGCUGGAAGcAUGGAAAA 1634381
                               ********************************************************************************* PP

                                                                     NC
                               ::::::::::::::::::::::::::::::::::::: CS
               RF02111     162 AGUAUCGGGUuUUGuUgaaCCugaauaAugaAgCaaC 198    
                               AGUAUCGGGU UUG+UGAACC++++U AU++ +CAAC
  gi_545778205_gb_U000 1634380 AGUAUCGGGUAUUGCUGAACCGUGUUGAUACGUCAAC 1634344
                               ************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_80
UUGACGUAUCAACACGGUUCAGCAAUACCCGAUACUUUUUCCAUGCUUCC
AGCAACGAGAUUUCUUCCUCCGUUGCAAUUUCCAGAUCUGCAGCAUCCUG
AAGCGGCGCAAUAUGCUCACUGGCUACCUGCAUCAGGUUGUUUUUUGUUU
CUUCCGCCUCCCGGAUCCGGAACAGUUUUUCUGCUUCCGUAUCCUUCA
.(((.(((((.....(((........))).)))))..((((..((((...))))..))))...((((....(((((((((....))).)))))).....)))).((((......((.....(((.(((((...))))).)))....))......))))....((((.((((((((.....))).))))).)))).))) (-43.30)

Length sequence

: 198

Length match:

197