gi_545778205_gb_U000_81

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

205.3

E-value:

8.3e-52

From sequence:

303611

To sequence:

303810

Alignments:

                                                                                                                  NC
                              :::::::<--<--.-<-<_________>->---->-->-------------..------------(((--((,,,<-<<--<< CS
               RF02111      1 UGAAaGAcacagA.aGCggAAAaAcuGcuCCggauuugggaGguagAAgaA..aCaaaaaAcAuuCuGAUGCAGguAGcCAGu 80    
                              UGAA+GA:A+A+A +GCG+AAA+AC+GC CC+++UUU:++ G+UA+AA++A  +C+++++A+AUUCUGAUGCAG+UAG:CAGU
  gi_545778205_gb_U000 303611 UGAAUGAUAAAAAuGGCGCAAAUACAGCGCCAUUUUUAUAGGUUAAAAACAuuGCUUUUUAUAUUCUGAUGCAGAUAGUCAGU 303693
                              *********************************************************************************** PP

                                                                                                                  NC
                              <<_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--))):::::::::::::::::::::::::::::::::: CS
               RF02111     81 gAGcAUAUcgCgCuaCUuCAgGAUGcUGUAGAUCcGgAgAucGCaACaGAgGAAGAaaCaUugUUGCUGGaAgaUGGAAgAAG 163   
                              GAG+AUAUCGC:CUACU:CAGGAUG+UGUAGAUCCG:AGA+CGC+ACAGA+GA GA++CAUUGUUGCUGG A+AU+GAAGAAG
  gi_545778205_gb_U000 303694 GAGUAUAUCGCGCUACUUCAGGAUGAUGUAGAUCCGAAGAACGCUACAGAAGA-GAGGCAUUGUUGCUGGCAAAUAGAAGAAG 303775
                              ****************************************************9.***************************** PP

                                                                  NC
                              ::::::::::::::::::::::::::::::::::: CS
               RF02111    164 UAUCGGGUuUUGuUgaaCCugaauaAugaAgCaaC 198   
                              UAUCGGGUUUUGUU+ +CCUGAA+AA+GAAGC++C
  gi_545778205_gb_U000 303776 UAUCGGGUUUUGUUACCCCUGAAAAACGAAGCCCC 303810
                              *********************************** PP

>>

RNAfold

>gi_545778205_gb_U000_81
GAAUGAUAAAAAUGGCGCAAAUACAGCGCCAUUUUUAUAGGUUAAAAACA
UUGCUUUUUAUAUUCUGAUGCAGAUAGUCAGUGAGUAUAUCGCGCUACUU
CAGGAUGAUGUAGAUCCGAAGAACGCUACAGAAGAGAGGCAUUGUUGCUG
GCAAAUAGAAGAAGUAUCGGGUUUUGUUACCCCUGAAAAACGAAGCCCC
.....(((((((((((((.......)))))))))))))..((((..((((.((((((((...(((((..((...((((..((((.....))))))))((((.((((.......))))))))...))..))))))))))))).))))..))))................((((((((((..........)))))))))). (-60.30)

Length sequence

: 199

Length match:

198