gi_545778205_gb_U000_82

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

223.8

E-value:

9.7e-57

From sequence:

581856

To sequence:

582054

Alignments:

                                                                                                                  NC
                              :::::::<--<---<-<_________>->---->-->-------------------------(((--((,,,<-<<--<<<<_ CS
               RF02111      1 UGAAaGAcacagAaGCggAAAaAcuGcuCCggauuugggaGguagAAgaAaCaaaaaAcAuuCuGAUGCAGguAGcCAGugAG 83    
                              UGAAAGA: CAGAAGC:GAAAAACUG:UCCGGAUU+:GGAGG++GAAGAAACAAAAAACA++C:GAUGCAGGUAGCCAGU:AG
  gi_545778205_gb_U000 581856 UGAAAGAUGCAGAAGCAGAAAAACUGUUCCGGAUUCGGGAGGCGGAAGAAACAAAAAACAGCCUGAUGCAGGUAGCCAGUGAG 581938
                              *********************************************************************************** PP

                                                                                                                  NC
                              ____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::.:::::::::::: CS
               RF02111     84 cAUAUcgCgCuaCUuCAgGAUGcUGUAGAUCcGgAgAucGCaACaGAgGAAGAaaCaUugUUGCUGGaAg.aUGGAAgAAGUA 165   
                              CAUAU:GCGC+ACUUCA:GAUGCUGUAGAUC:GGA+AUCGCAAC:GAGGAAGAAAC+U++UUGCUGGAAG +UGGAA+AA UA
  gi_545778205_gb_U000 581939 CAUAUUGCGCCACUUCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAACCUCAUUGCUGGAAGcCUGGAAAAAAUA 582021
                              *********************************************************************************** PP

                                                                NC
                              ::::::::::::::::::::::::::::::::: CS
               RF02111    166 UCGGGUuUUGuUgaaCCugaauaAugaAgCaaC 198   
                              UCGGGU+UUG+UGAACC++++U AU++A+CAAC
  gi_545778205_gb_U000 582022 UCGGGUGUUGCUGAACCGUGUUGAUACAUCAAC 582054
                              ********************************* PP

>>

RNAfold
>gi_545778205_gb_U000_82
GAAAGAUGCAGAAGCAGAAAAACUGUUCCGGAUUCGGGAGGCGGAAGAAA
CAAAAAACAGCCUGAUGCAGGUAGCCAGUGAGCAUAUUGCGCCACUUCAG
GAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAACCUCAUUGCUGGA
AGCCUGGAAAAAAUAUCGGGUGUUGCUGAACCGUGUUGAUACAUCAAC
....((((....(((((.....)))))(((....)))((.((((.((.(((........(((((((((((((..(((((((.....((((((((((.(((....))).))...)))....)))))..((((......)))).)))))))..))))).......))))))))))).))...)))).))....))))... (-51.90)

Length sequence

: 198

Length match:

197