gi_545778205_gb_U000_83

cmsearch-Rfam

Family :

IS009

Id:

RF02111

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

106.6

E-value:

2.1e-25

From sequence:

582898

To sequence:

583101

Alignments:

                                          v                      v                                  v   v    v v  NC
                              :::::::..<--<---<-<_________>->---->-->-------------...------------.(((.--((,,,<-<< CS
               RF02111      1 UGAAaGA..cacagAaGCggAAAaAcuGcuCCggauuugggaGguagAAgaA...aCaaaaaAcAuu.CuG.AUGCAGguAGc 76    
                              UGAAA A  C    A GC:  AA+AC  : C GGA ++G++ GG+ G A+ A    CA  A ACA+U C:  AU CAGG A :
  gi_545778205_gb_U000 582898 UGAAAUAgcCUGGUAUGCUUCAAUAC--AGCAGGAGCCGAAUGGCUGGAAGAccgUCACCACACAGUuCUAcAUCCAGGAAUU 582978
                              ***9876114445679**99998888..779999999988888877666666699888888888875377789********** PP

                                              v v  v                  v      v  v                                 NC
                              --<<<<_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::.::::: CS
               RF02111     77 CAGugAGcAUAUcgCgCuaCUuCAgGAUGcUGUAGAUCcGgAgAucGCaACaGAgGAAGAaaCaUugUUGCUGGaAg.aUGGA 158   
                              CAGU:AG+AUAU:GC: + CU CA:GAUGCUGUAGAUC:G A+AUCG AA :GAGGAAGAAA AU+GUUGCUGGAAG +UG A
  gi_545778205_gb_U000 582979 CAGUGAGUAUAUUGCGCCACUGCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAAGAUCGUUGCUGGAAGcCUGAA 583061
                              *********************************************************************************** PP

                                                                       NC
                              :::::::::::::::::::::::::::::::::::::::: CS
               RF02111    159 AgAAGUAUCGGGUuUUGuUgaaCCugaauaAugaAgCaaC 198   
                              A+AAGUAUCGGGU+ UG+U+AACC++++  A+++ +C+  
  gi_545778205_gb_U000 583062 AAAAGUAUCGGGUGCUGCUAAACCGUGUGGACACUUCCGU 583101
                              **************************************** PP

RNAfold

>gi_545778205_gb_U000_83
GAAAUAGCCUGGUAUGCUUCAAUACAGCAGGAGCCGAAUGGCUGGAAGAC
CGUCACCACACAGUUCUACAUCCAGGAAUUCAGUGAGUAUAUUGCGCCAC
UGCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAAGAUCGUUG
CUGGAAGCCUGAAAAAAGUAUCGGGUGCUGCUAAACCGUGUGGACACUUC
CGU
.......((((((((......))))..))))((((....))))(((((...((..((((((.(((.....((((((...((....(((((.((((......)))).)))))...))))))))....((((((.............))))))(((..((((((........))))))....)))))).)))))))).))))).. (-56.10)

Length sequence

: 203

Length match:

202