Alignments: v v v v v v NC
:::::::..<--<---<-<_________>->---->-->-------------...------------.(((.--((,,,<-<< CS
RF02111 1 UGAAaGA..cacagAaGCggAAAaAcuGcuCCggauuugggaGguagAAgaA...aCaaaaaAcAuu.CuG.AUGCAGguAGc 76
UGAAA A C A GC: AA+AC : C GGA ++G++ GG+ G A+ A CA A ACA+U C: AU CAGG A :
gi_545778205_gb_U000 582898 UGAAAUAgcCUGGUAUGCUUCAAUAC--AGCAGGAGCCGAAUGGCUGGAAGAccgUCACCACACAGUuCUAcAUCCAGGAAUU 582978
***9876114445679**99998888..779999999988888877666666699888888888875377789********** PP
v v v v v v NC
--<<<<_____>>>>>>->,<<<-<<<<_______>>>>>>>,,,,))--)))::::::::::::::::::::::::.::::: CS
RF02111 77 CAGugAGcAUAUcgCgCuaCUuCAgGAUGcUGUAGAUCcGgAgAucGCaACaGAgGAAGAaaCaUugUUGCUGGaAg.aUGGA 158
CAGU:AG+AUAU:GC: + CU CA:GAUGCUGUAGAUC:G A+AUCG AA :GAGGAAGAAA AU+GUUGCUGGAAG +UG A
gi_545778205_gb_U000 582979 CAGUGAGUAUAUUGCGCCACUGCAGGAUGCUGUAGAUCUGGAAAUCGCAACGGAGGAAGAAAGAUCGUUGCUGGAAGcCUGAA 583061
*********************************************************************************** PP
NC
:::::::::::::::::::::::::::::::::::::::: CS
RF02111 159 AgAAGUAUCGGGUuUUGuUgaaCCugaauaAugaAgCaaC 198
A+AAGUAUCGGGU+ UG+U+AACC++++ A+++ +C+
gi_545778205_gb_U000 583062 AAAAGUAUCGGGUGCUGCUAAACCGUGUGGACACUUCCGU 583101
**************************************** PP
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