gi_545778205_gb_U000_84

cmsearch-Rfam

Family :

IS061

Id:

RF00115

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of several bacterial RNA genes of 181 bases in length which are found
between the abgR and ydaL genes in Escherichia coli and Shigella flexneri. The function of
this family is unknown.

Score:

232.1

E-value:

1.1e-45

From sequence:

1405630

To sequence:

1405809

Alignments:

                                                                                                                 NC
                               <<<______>>>,,,,,,(((((((,,,,,,,,,,<<<<<<<<<___________>>>>>>>>>,,<<<<________>>> CS
               RF00115       1 GcgguUAUuugCAaAGUuaaaacuGaAUAAAAAAAuaGaGuCuGUCGACAUCCGCCaGaCuCuaCAGuaCACACAGCAGug 81     
                               GCGG+UAU+UGCAAAGUUAAAACUG+AUAAAAAAAUAGAGUCUGUCGACAUCCGCCAGACUCUACAGUACACACAGCAGUG
  gi_545778205_gb_U000 1405630 GCGGCUAUCUGCAAAGUUAAAACUGCAUAAAAAAAUAGAGUCUGUCGACAUCCGCCAGACUCUACAGUACACACAGCAGUG 1405710
                               ********************************************************************************* PP

                                                                                                                 NC
                               >,,,,,,<<<------<<<<<______________>>>>>->>>,,,,,,,,,,)))))))--------<<<<<_______ CS
               RF00115      82 CAUCCgCGuCUUAAAUCCGGCaUuGucUCCUcugcGCCGGUGaCuGUGUUAUAACgguuuuAaCCuUuaGuugCCAAUUUU 162    
                               CAUCCGCGUCUUAAAUCCGGCAUUGUCUCCUCUGCGCCGGUGACUGUGUUAUAACGGUUUUAACCUUUAGUUGCCAAUUUU
  gi_545778205_gb_U000 1405711 CAUCCGCGUCUUAAAUCCGGCAUUGUCUCCUCUGCGCCGGUGACUGUGUUAUAACGGUUUUAACCUUUAGUUGCCAAUUUU 1405791
                               ********************************************************************************* PP

                                                  NC
                               _____>>>>>:::::::: CS
               RF00115     163 CUUCAGugaCAGAUUUCA 180    
                               CUUCAGUGACAGAUUUCA
  gi_545778205_gb_U000 1405792 CUUCAGUGACAGAUUUCA 1405809
                               ****************** PP

RNAfold
>gi_545778205_gb_U000_84
CGGCUAUCUGCAAAGUUAAAACUGCAUAAAAAAAUAGAGUCUGUCGACAU
CCGCCAGACUCUACAGUACACACAGCAGUGCAUCCGCGUCUUAAAUCCGG
CAUUGUCUCCUCUGCGCCGGUGACUGUGUUAUAACGGUUUUAACCUUUAG
UUGCCAAUUUUCUUCAGUGACAGAUUUCA
.(((...(((.((.((((((((((..........(((((((((.((.....)).)))))))))......((((((((.(((....)))........(((((...(......)...))))))).)))))).....)))))))))).)))))..)))(((((((......)).)))))... (-44.90)

Length sequence

: 179

Length match:

178