gi_545778205_gb_U000_85

cmsearch-Rfam

Family :

IS102

Id:

RF00124

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This family consists of a group of Shigella flexneri and Escherichia coli RNA genes which are
208 bases in length and are found between the yeeP and flu genes. The function
of this RNA is unknown.

Score:

253.5

E-value:

2.7e-50

From sequence:

2071315

To sequence:

2071518

Alignments:

                                                                                                                 NC
                               :::::::::::::::::<<<<<<<<<_______>>>>>>>>>,,,,,,,,,,,,,,,,,<<<-<<_______>>->>>,,, CS
               RF00124       1 ACGAUCgAUAuCuAUUUcauCGauCGUUuAUAUCGauCGauguGCUAAUAAUAACuuuUgucAGcAAcgUgcgCAgacAca 81     
                               ACGAUC+AUAUCUAUUU:AUCGAUCGUUUAUAUCGAUCGAU:+GCUAAUAAUAAC+UUU:UCAG:AAC+UGC:CAGA:AC+
  gi_545778205_gb_U000 2071315 ACGAUCAAUAUCUAUUUUAUCGAUCGUUUAUAUCGAUCGAUAAGCUAAUAAUAACCUUUGUCAGUAACAUGCACAGAUACG 2071395
                               ********************************************************************************* PP

                                                                                                                 NC
                               ,,,,,,,,,,,,,,,,,<<<---------------------------------<<<<<____>>>>>------->>>,,,, CS
               RF00124      82 uaCAGAcAuGAgAUUCaGGGAACAACAGAgCCACAagUCAGAAAcUuCCaUCAGCCGgAcCUcCGGCACUGUAACCCUUUA 162    
                               UACAGA A+GA AUUCAGGGAACAACAGA+CCACAA+UCAGAAACU+CCA CAGCCGGACCUCCGGCACUGUAACCCUUUA
  gi_545778205_gb_U000 2071396 UACAGA-AAGACAUUCAGGGAACAACAGAACCACAAUUCAGAAACUCCCA-CAGCCGGACCUCCGGCACUGUAACCCUUUA 2071474
                               ******.*******************************************.****************************** PP

                                                                            NC
                               ,,,<<<<<<<<<<<<<__>>>>>>>>>>>>>::::::::::::: CS
               RF00124     163 CCUGCcGGuauCCaCaUuuGuGGauaCCgGCUUUUUUAUUCACC 206    
                               CCUGCCGGUA:CCAC:UU:GUGG:UACCGGCUUUUUUAUUCACC
  gi_545778205_gb_U000 2071475 CCUGCCGGUAUCCACGUUUGUGGGUACCGGCUUUUUUAUUCACC 2071518
                               ******************************************** PP

RNAfold
>gi_545778205_gb_U000_85
ACGAUCAAUAUCUAUUUUAUCGAUCGUUUAUAUCGAUCGAUAAGCUAAUA
AUAACCUUUGUCAGUAACAUGCACAGAUACGUACAGAAAGACAUUCAGGG
AACAACAGAACCACAAUUCAGAAACUCCCACAGCCGGACCUCCGGCACUG
UAACCCUUUACCUGCCGGUAUCCACGUUUGUGGGUACCGGCUUUUUUAUU
CACCC
...............(((((((((((.......)))))))))))............(((((((......)).)))))....(((((...........((((......(((......)))......))))...(((((....))))).)))))...........((((((((((((....)))))))))))).............. (-55.70)

Length sequence

: 205

Length match:

202