gi_545778205_gb_U000_89

cmsearch-Rfam

Family :

isrA

Id:

RF01385

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

30.1

E-value:

0.00019

From sequence:

3694774

To sequence:

3694655

Alignments:

                                                              v                 v    vv     vv       v     v     NC
                               ::::::::::::::::::::::::::<-<<<<<<<<------------<<<<<<<<_____>>>>--->>>>>>>>>>>>- CS
               RF01385       1 AUCUUCACgGUgACGCugcgcCCGGUcUcaaAUCCCGCUUCUUcCuGcCAGuCacCCUUAAGguGCaGgCUGGGGAUuugU 81     
                               AUC UCAC  U  CGCUG  +C GG :U:AA :::CG U CU       AG:C:   UUAA  :GC+G:C  G::: UU:U
  gi_545778205_gb_U000 3694774 AUCGUCACCUUCUCGCUGAUUCUGGCGUUAAUCUGCGUUACUC------AGCCG--UUUAACCCGCUGGC--GCAGUUUAU 3694704
                               ***************************************9995......59997..89999889999999..********* PP

                                                                                 NC
                               >-------------------.-----<<<__________>>>::::::: CS
               RF01385      82 gAGUAAcAgguGGUcAUgca.GGUUUcGCUGUUgauGUGGCgGACGCUG 129    
                               :      A G  G + UG   GGU  CGCUG U  U  GGCGGA GC G
  gi_545778205_gb_U000 3694703 CUUCCUGAUGCUGCUGUGGGgGGUAGCGCUGAUCGUACGGCGGAUGCCG 3694655
                               **999999999999988765156778*********************** PP

RNAfold
>gi_545778205_gb_U000_89
GCCCCGGCAUCCGCCGUACGAUCAGCGCUACCCCCCACAGCAGCAUCAGG
AAGAUAAACUGCGCCAGCGGGUUAAACGGCUGAGUAACGCAGAUUAACGC
CAGAAUCAGCGAGAAGGUGACGAUGAUAC
....((((....))))....((((.((.((((.......((((.(((.....)))...))))((((((.(......).)))).))..(((.((((........)))).)))....)))).)).)))).. (-33.20)

Length sequence

: 129

Length match:

118