gi_545778205_gb_U000_90

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

30.9

E-value:

3.5e-06

From sequence:

935665

To sequence:

935376

Alignments:

                                      vv        v     v    vv      v                        vv       vv      v    NC
                              :::::{{{{{-{{{--{{{{--{{{{[[[[[[[[--[[[[[[[,,,,,,,,,,,,,,,,<<<<<<<___>>>>>>><<<<<-- CS
               RF01390      1 GUUUugcggCauccUCuGCcCuGGugGCcgcugCUCCgGCaGCAGuaCUGCUUUGCGCcgCCaGuGAUGCgCuGGuauCaGAU 83    
                               U U GCG  A::: CUG : UGG   C:  U:CU C GC GC G  C  C     G +G:    G UGC    :UAU  G U
  gi_545778205_gb_U000 935665 UUGUGGCGCAACUGGCUGUUGUGGCUGCUGAUACUGCUGCUGCGGCGCAACCG---GUUGUUGCGGCUGCU--GAUAUU-GCU 935589
                              ***************************************99998887776654...444444456666664..577876.889 PP

                                       v      v            v      vvv             v v    v               v        NC
                              -<<<-<<<<<______>>>>>->>>--->>>>>((-((((((((-((((((-((((-(((((,<<____>>,,,,<<----<< CS
               RF01390     84 GCGGCGGCguGagUGGauGCCUCCGAUGCuGauGaCgaGGcGGCUgccGCgccggcuGCcGcugcAcuugcuGaCGcugcugc 166   
                              GC G   CG  A  GG UG   C G UGCU AU:     G :GCUGC GC:C : C GC G:UG:   U:CUGA  CUGC :C
  gi_545778205_gb_U000 935588 GCUGUGGCGCAACCGGUUGUUGCGGCUGCUGAUAUU---GUGGCUGCGGCGCAACCGGCUGUUGUGGCUGCUGAUACUGCGGC 935509
                              9************************99998888765...5669********************************9*999998 PP

                                              v   v    v v               vvv              v      vv               NC
                              <<~~~~~>>>>---->>,)))))-))))-))))))-))..))))))-..)),,,,]]]]]]]--]]]]]]]],,,,<~~~~~~ CS
               RF01390    167 gu*[9]*acgcUUUUgCugCgGCugccgacGCggcUGC..CgCCucu..uCcGAcGCuGCcGccGcagcgGCuGACg*[ 6]* 249   
                              :       :G:U UUG  :C GCUG :  :GC GCUGC  : C++C    : G +GC GC GC+G:A  :G U A :      
  gi_545778205_gb_U000 935508 UG*[9]*UGGUUGUUGCGGCUGCUGAUAUUGCUGCUGCggUGCAAC-cgGUUGUUGCGGCUGCUGUACAGGUUCAAC*[23]* 935406
                              65..5..457888888888888888888888888888843333333.237888889999999999998888887766...9.. PP

                                  v   v        vv             NC
                              >,,}}}}}}}}--}}}-}}}}}::::::::  CS
               RF01390    250 cAucaCCgGCacuggagGccgccUgugUUU  280   
                              :    CC: CA+ :::   CGC U++ UU  
  gi_545778205_gb_U000 935405 GUGGACCAUCAUCCAGCAACGCUUUCAUUG  935375
                              58899*************************  PP

RNAfold

>gi_545778205_gb_U000_90
AAUGAAAGCGUUGCUGGAUGAUGGUCCACACGAACCGUUGUUUACGCCAA
UUGUUGAACCUGUACAGCAGCCGCAACAACCGGUUGCACCGCAGCAGCAA
UAUCAGCAGCCGCAACAACCAGUUCCGCCGCAGCCGCAGUAUCAGCAGCC
ACAACAGCCGGUUGCGCCGCAGCCACAAUAUCAGCAGCCGCAACAACCGG
UUGCGCCACAGCAGCAAUAUCAGCAGCCGCAACAACCGGUUGCGCCGCAG
CAGCAGUAUCAGCAGCCACAACAGCCAGUUGCGCCACAA
.......((((.(((((((((((((........)))))))).........(((((((..((((...((.((.((..((((((((((....((.((.((.......)).)).))........(((.((.(((((((((.((.............)).).)))))))).)).)))..........(((((((.......)))))))......((.((.......)).)).....)))))))))).)).)).)).))))..))))))).........))))).))))..... (-88.80)

Length sequence

: 289

Length match:

288