gi_545778205_gb_U000_92

cmsearch-Rfam

Family :

istR

Id:

RF01400

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

25.8

E-value:

0.0076

From sequence:

1019080

To sequence:

1018971

Alignments:

                                v  v                                         v  v                                NC
                               :<<<<<---.-<<----<<<--<<<~~~~~~>>>--->>>--->>>>>>>,,,,,,<~~~~~~>,<<<<<<<<<<<____> CS
               RF01400       1 cGuCaaAAu.uCgugCCgaaAUugC*[18]*GuaUACuucuagcGuuGaCaUAAuAC*[33]*GaaaaaaCCcCGCUcCGG 119    
                               C :C :A   UCG G  GA:AU:G:      :U:UA :UC   CG: G:  UAA  :      : AAAAACCCCGCU C G
  gi_545778205_gb_U000 1019080 CUCCGGAUCgUCGCGUAGAGAUCGA*[20]*UUGUAACUCAGCCGCAGGCUUAAGUU*[10]*AGAAAAACCCCGCUGCUG 1018982
                               ******97538************97...7..79*********************997...7..8***************** PP

                                           NC
                               >>>>>>>>>>: CS
               RF01400     120 CGgGGuuuuuU 130    
                               CGGGGUUUUUU
  gi_545778205_gb_U000 1018981 CGGGGUUUUUU 1018971
                               *********** PP

RNAfold
>gi_545778205_gb_U000_92
UAAAGGCAAAAAAAACCCCGCAGCAGCGGGGUUUUUCUACCAGACGAGAA
CUUAAGCCUGCGGCUGAGUUACAACGUCUUUGAUACCUUUAACUUCGAUC
UCUACGCGACGAUCCGGAGCCAGGCAGUC
((((((....(((((((((((....))))))))))).....(((((..((((((.(((...)))))))))....)))))......)))))).((((((((((.....)).))).))))).......... (-42.10)

Length sequence

: 129

Length match:

108