gi_545778205_gb_U000_93

cmsearch-Rfam

Family :

istR

Id:

RF01400

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

28.5

E-value:

0.0017

From sequence:

2282748

To sequence:

2282845

Alignments:

                                   v                   v         v  v                  v  v                      NC
                               :<<<<<----<<---~~~~~~>>>>>>>,,,,,,<<<<-<<<<-<~~~~~~>>>>>>>>>,<<<<<<<<<<<____>>>>> CS
               RF01400       1 cGuCaaAAuuCgugC*[39]*cGuuGaCaUAAuACaGcGcgccUu*[15]*aggcggCuGaaaaaaCCcCGCUcCGGCGgG 123    
                               C::C : A +CGU+C      CG: G::+ A  ACA  G::::         ::::  U AAAAAACCCCGCUCCGGCGGG
  gi_545778205_gb_U000 2282748 CAGCGUCACCCGUAC*[ 4]*CGAAGCUGCAGCACAUCGACUUCG*[19]*UAAGUUGU-AAAAAACCCCGCUCCGGCGGG 2282838
                               ************987...6..999999999999877776555544...6..45555434.58999**************** PP

                                       NC
                               >>>>>>: CS
               RF01400     124 GuuuuuU 130    
                               GUUUUUU
  gi_545778205_gb_U000 2282839 GUUUUUU 2282845
                               ******* PP

>>

RNAfold
>gi_545778205_gb_U000_93
AAAGCUCAGGACGUACAGCGUCACCCGUACAAACCGAAGCUGCAGCACAU
CGACUUCGUUCGCGCUUAAUUGCUGAAUAAGUUGUAAAAAACCCCGCUCC
GGCGGGGUUUUUUGUAUCUGCAGAUUAUG
.........(((((...))))).................((((((.....((((((.(((((.((......)))))))))))))(((((((((((((....)))))))))))))...))))))...... (-45.00)

Length sequence

: 129

Length match:

96