gi_545778205_gb_U000_94

cmsearch-Rfam

Family :

istR

Id:

RF01400

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

30.6

E-value:

0.0005

From sequence:

3811277

To sequence:

3811204

Alignments:

                                   v                                    v                                        NC
                               :<<<<<----<<----<<<--<~~~~~~>--->>>--->>>>>>>,,,,,,~~~~~~,<<<<<<<<<<<____>>>>>>>> CS
               RF01400       1 cGuCaaAAuuCgugCCgaaAUu*[22]*aUACuucuagcGuuGaCaUAAuA*[35]*aaaaaaCCcCGCUcCGGCGgGGuu 126    
                                :UC A A  :G + CGAAA U      AUA UUCU GC:U GA:+UAA        AAAAAACC:CGCUCCGGCG:GGUU
  gi_545778205_gb_U000 3811277 GAUCUACAA-AGAAGCGAAAAU*[ 3]*AUAAUUCUCGCUUUGAUGUAAC-*[ 0]*AAAAAACCUCGCUCCGGCGGGGUU 3811208
                               ******876.899999***998...6..8999***************986.......699********************* PP

                                    NC
                               >>>: CS
               RF01400     127 uuuU 130    
                               UUUU
  gi_545778205_gb_U000 3811207 UUUU 3811204
                               **** PP

>>

RNAfold
>gi_545778205_gb_U000_94
CAGUCAAUAUGGGGGCAAGCAGAUAACAAAAAACCCCGCCGGAGCGAGGU
UUUUUGUUACAUCAAAGCGAGAAUUAUUUGAUUUUCGCUUCUUUGUAGAU
CACGUGCUGGCGAACAACUGGAUCGAAUU
((((.....((...((.((((....((((((((((.(((....))).))))))))))((((...(((((((((((....)))))))))))...)))).......)))).))...))))))......... (-38.90)

Length sequence

: 129

Length match:

72