gi_545778205_gb_U000_95

cmsearch-Rfam

Family :

istR

Id:

RF01400

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

149.9

E-value:

3.4e-33

From sequence:

3853247

To sequence:

3853118

Alignments:

                                                                                                                 NC
                               :<<<<<----<<----<<<--<<<<<<<<<<____>>>>>>>>>>--->>>--->>>>>>>,,,,,,<<<<-<<<<-<<<< CS
               RF01400       1 cGuCaaAAuuCgugCCgaaAUugCgcGuuccgCgcggaaCgcGuaUACuucuagcGuuGaCaUAAuACaGcGcgccUuGCG 81     
                               CGUCAAAAUUC:UGCC:AAAUUGCG:GUUC:GCGC:GAAC:CGUAUACUU:+AG:GUUGACAUAAUACAG:G:GC:UUGCG
  gi_545778205_gb_U000 3853247 CGUCAAAAUUCGUGCCGAAAUUGCGCGUUCUGCGCGGAACACGUAUACUUUCAGUGUUGACAUAAUACAGUGUGCUUUGCG 3853167
                               ********************************************************************************* PP

                                                     v                        v  NC
                               <_______>>>>>>>>>>>>>,<<<<<<<<<<<____>>>>>>>>>>>: CS
               RF01400      82 GuuACCAgCCGCaggcggCuGaaaaaaCCcCGCUcCGGCGgGGuuuuuU 130    
                               GUUACCAGCCGCA:GC::CUGA :AAACC:CGCUCCGGCG:GGUUU: U
  gi_545778205_gb_U000 3853166 GUUACCAGCCGCAGGCGACUGACGAAACCUCGCUCCGGCGGGGUUUUUU 3853118
                               ************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_95
AAAAACCCCGCCGGAGCGAGGUUUCGUCAGUCGCCUGCGGCUGGUAACCG
CAAAGCACACUGUAUUAUGUCAACACUGAAAGUAUACGUGUUCCGCGCAG
AACGCGCAAUUUCGGCACGAAUUUUGACG
..(((((.(((....))).)))))((((((((((((((((.......)))))..(.((((.((((....(((....)))....)))))))).).((((.....))))......)))..))...)))))) (-35.00)

Length sequence

: 129

Length match:

128