Ec_rtT,

cmscan-Rfam

Family :

RtT

Id:

RF00391

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family represents a bacterial cis-regulatory element known as RtT RNA. The exact function of RtT
is unknown although it is thought that it may be involved in changing the cellular
response in relation to amino acid starvation [1].

Score:

135.3

E-value:

6.7e-32

From sequence:

40

To sequence:

171

Alignments:

                                                                                                                     NC
              ::::::::::::::(((((((-(---------((-((----((((,,,<<_____.__>>,,,,,,<<<<<<____.>>>>>>,,,))))-))))------- CS
  RF00391   1 uuauuuugcauaugGgGgaGGAUGAgAAcCuUCGaccaAGGUuCGAgucgAGCGa.AGcgAGAaAaCGucGCgucA.GCgaCGgCCCGaAGggCGAGGcgCg 100
              +U+ U + CAU+ GGGG:AGGAUGAGAA CUUCGACCAAGGUUCGA+UCGAGCG  AGCGAGA+A+CGU:GC+ CA GC:ACG+CCCGAAGGGCGA+GCGCG
  Ec_rtT,  40 AUUCUGCCCAUGCGGGGAAGGAUGAGAAGCUUCGACCAAGGUUCGACUCGAGCGCcAGCGAGAGAGCGUUGCCGCAgGCAACGACCCGAAGGGCGAAGCGCG 141
              ****************************************************************************************************** PP

                                             NC
              ------------)-)))))))::::::::: CS
  RF00391 101 aAGcGaCGAgUaAUCCucCcCccaCCACCA 130
              +AGCG++GAGUAAUCCU:CCCCCACCACCA
  Ec_rtT, 142 CAGCGCUGAGUAAUCCUUCCCCCACCACCA 171
              ****************************** PP

RNAfold
>Ec_rtT,
uucugcccaugcggggaaggaugagaagcuucgaccaagguucgacucga
gcgccagcgagagagcguugccgcaggcaacgacccgaagggcgaagcgc
gcagcgcugaguaauccuucccccaccacca
.........((.((((((((((..(((.(((.....))).)))..(((..((....))..)))..(((((((...))))))).(((...)))(..(((((...)))))..)..))))))))))))...... (-51.00)

Length sequence

: 131

Length match:

130