QUAD1b_RyeD,

cmscan-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

105.9

E-value:

9.1e-24

From sequence:

1

To sequence:

110

Alignments:

                                    v                v v                                              v              NC
                   ~~~~~~(--((((((,,<<<____________>>>,<<<<________________________________________>>>><<<<<<<______ CS
       RF00113   1 <[33]*AgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCUUAgUAaGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuagu 124
                         AGU:AGGGUA  G: GG+UUUC+CC+:C + UGGU+GUCUUAGUAAGC GGGAA+CUUAUGA+UAA+AG+A   CCA+:AUGAUGA UAG+
  QUAD1b_RyeD,   1 <[ 0]*AGUGAGGGUAGAGCGGGGUUUCCCCCGCCC-UGGUAGUCUUAGUAAGCGGGGAAGCUUAUGACUAAGAGCA---CCACGAUGAUGAGUAGC 87 
                   ......******************************.****************************************...***************** PP

                                   ???     NC
                   __>>>>>>>)))))))))):::: CS
       RF00113 125 uuCAUCAUaaCCCUuUCCUUaUu 147
                   UUCAUCAU:ACCCU:UCCUUAUU
  QUAD1b_RyeD,  88 UUCAUCAUGACCCUUUCCUUAUU 110
                   *********************** PP

RNAfold
>QUAD1b_RyeD,
gugaggguagagcgggguuucccccgcccugguagucuuaguaagcgggg
aagcuuaugacuaagagcaccacgaugaugaguagcuucaucaugacccu
uuccuuauuuauggccccuuccucgggaggggcuuu
..((((((...((((((....))))))..((((..(((((((((((......))))...)))))))..))))..((((((((....)))))))).))))))...........(((((((((....))))))))).. (-61.00)

Length sequence

: 136

Length match:

109