QUAD1d_tp8,

cmscan-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

120.4

E-value:

2.8e-27

From sequence:

1

To sequence:

118

Alignments:

                                                                                                                     NC
                  ~~~~~~(((--((((((,,<<<____________>>>,<<<<______..__________________________________>>>><<<<<<<___ CS
      RF00113   1 <[31]*GGAgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCU..UAgUAaGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcu 121
                        GGA+ AAGGGUAAGGGAGGAUUUCUCC+CCCUCUG:UUG CU  UA+UAAGCUG GAAACUUA GAGUAACA +ACAA:CAGUAUGAUGAC 
  QUAD1d_tp8,   1 <[ 0]*GGAACAAGGGUAAGGGAGGAUUUCUCCCCCCUCUGAUUGGCUguUAAUAAGCUGCGAAACUUACGAGUAACAACACAAUCAGUAUGAUGACG 92 
                  ......******************************************************************************************** PP

                                       ?     NC
                  _____>>>>>>>)))))))))):::: CS
      RF00113 122 aguuuCAUCAUaaCCCUuUCCUUaUu 147
                  AG+UUCAUCAUAACCCUUUCCUU U 
  QUAD1d_tp8,  93 AGCUUCAUCAUAACCCUUUCCUUCUG 118
                  ************************** PP

RNAfold
>QUAD1d_tp8,
gaacaaggguaagggaggauuucuccccccucugauuggcuguuaauaag
cugcgaaacuuacgaguaacaacacaaucaguaugaugacgagcuucauc
auaacccuuuccuucuguaaggcccccuucuucgggaggggcuuuc
....((((((.((((.(((....))).))))((((((((.(((((.((((........))))....))))).).)))))))((((((((......)))))))))))))).........((((((((.(((....))))))))))). (-49.80)

Length sequence

: 146

Length match:

117