RybB,

cmscan-Rfam

Family :

RybB

Id:

RF00110

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This ncRNA was identified in a large scale screen of E. coli [1]. The function of
this short RNA is unknown. The exact 5' and 3' ends of this RNA are
uncertain.

Score:

95.9

E-value:

2.3e-21

From sequence:

1

To sequence:

75

Alignments:

                                                                                             NC
             :::::::::::::::::::::::::::::::<<<<<<<<<<<<_________________>>>>>>>>>>>>::::::: CS
  RF00110  1 ACUGCUUUUCUUUGAUGUCCCCAUuUUGaGGAgCCCgccaguCCCGCCuUUUaGGUUCAAGacuggcGGGuUUUUUuUU 79
             ACUGCUUUUCUUUGAUGUCCCCAUUUUG+GGAGCCC::CA::CCCGCC+UUU GGUUCAAG::UG::GGGUUUU    U
    RybB,  1 ACUGCUUUUCUUUGAUGUCCCCAUUUUGUGGAGCCCAUCAACCCCGCCAUUUCGGUUCAAGGUUGAUGGGUUUU----U 75
             *************************************************************************9....9 PP

RNAfold
>RybB,
cugcuuuucuuugauguccccauuuuguggagcccaucaaccccgccauu
ucgguucaagguugauggguuuuu
...................((((...))))((((((((((((..(((.....)))....))))))))))))... (-23.90)

Length sequence

: 74

Length match:

74