RydB_tpe7,

cmscan-Rfam

Family :

rydB

Id:

RF00118

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of several bacterial sequences from E. coli, Shigella flexneri and Salmonella species. This
RNA gene was discovered by an RNA screen [1] between the ydiC and ydiH in
E. coli. This gene is only 67 bases in length and is composed of a
hairpin like structure. The function of this RNA is unknown.

Score:

79.2

E-value:

7.6e-20

From sequence:

1

To sequence:

61

Alignments:

                                                                               NC
                :((((,,,,,,,<<<____________>>>,<<<<-<_____>->>>>,,)))):::::::: CS
     RF00118  1 GCCCCUUcaAGAGCUAAgcCcaaugUGAGUGCCGGAGAUAAGCGCCGGgUGGGGcaaAauuu 62
                GCCCCUUCAAGAGCUAAGCC A UG GAGUGCCGGAGAUAAGCGCCGG+UGGGG+A AA+ +
  RydB_tpe7,  1 GCCCCUUCAAGAGCUAAGCC-ACUGAGAGUGCCGGAGAUAAGCGCCGGAUGGGGUAGAAACC 61
                ********************.***************************************** PP

RNAfold
>RydB_tpe7,
gccccuucaagagcuaagccacugagagugccggagauaagcgccggaug
ggguagaaaccc
(((((.......((...))((((...))))((((.(.....).))))..)))))........ (-14.90)

Length sequence

: 62

Length match:

59