RyeB,

cmscan-Rfam

Family :

SraC_RyeA

Id:

RF00101

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screens [1-2]. The function of
this RNA is unknown. This RNA overlaps RFAM:RF00111 on the opposite strand suggesting that the
two may act in a concerted manner.

Score:

124.6

E-value:

5.3e-30

From sequence:

105

To sequence:

1

Alignments:

                                v           v                                                                        NC
              ~~~~~::::::<<<<<<<<<<_______>>>>>>>>>>,,,,,,,<<<<<<<<______>>>>>>>>,,<<_________>>,,,,,,,,,<<<______>> CS
  RF00101   1 <[5]*AAAAaAGaCCGaauacGAUUCCUguauuCGGuCuAGGGAAauGGCuCuUGGGAgaGaGCCguGCGCUAAAAGUUGGCAUUAAuGuAGGCUuAuUcGC 102
                   AAAA+AGACCGAA ACGAUUCCUGU UUCGGUC+AGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUG+AGGCUUA U+GC
    RyeB, 105 <[0]*AAAAGAGACCGAACACGAUUCCUGUAUUCGGUCCAGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUGCAGGCUUAGUUGC 9  
              .....************************************************************************************************* PP

                             NC
              >:::::::~~~~~~ CS
  RF00101 103 CuuaCucu*[35]> 145
              CUU+C CU      
    RyeB,   8 CUUGCCCU*[ 0]> 1  
              ********...... PP

RNAfold
>RyeB,
gggcaaggcaacuaagccugcauuaaugccaacuuuuagcgcacggcucu
cucccaagagccauuucccuggaccgaauacaggaaucguguucggucuc
uuuu
(((...(((......)))(((.((((.........)))).))).((((((......))))))....))).(((((((((((.......)))))))))))..... (-35.20)

Length sequence

: 104

Length match:

104