RygA,

cmscan-Rfam

Family :

OmrA-B

Id:

RF00079

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

77.0

E-value:

5.8e-16

From sequence:

12

To sequence:

91

Alignments:

                            v           v               v               v                            NC
             :::::::::::::::<<<<<<------<<<<<<_____>>>>>>---->------>>>>><<<<<<<<____>>>>>>>>::::::: CS
  RF00079  1 CCCAGAGGUAUUGAUuGGUGauuaauaggcacgcucuucgugccuAauuuaaUUgCACCaaCCUgCGCaGAUGCGcAGGuUUUUUUU 87
             CCCAGAGGUAUUGAU GGUGA     A :CA::+UC  ::UG: +A +U AAUU+CACC :CCUGCGCAGAUGCGCAGG:UU  UUU
    RygA, 12 CCCAGAGGUAUUGAUAGGUGA-----AGUCAACUUCGGGUUGAGCACAUGAAUUACACCAGCCUGCGCAGAUGCGCAGGUUU--UUU 91
             ********************9.....9*****************************************************75..589 PP

RNAfold
>RygA,
uggugaucccagagguauugauaggugaagucaacuucggguugagcaca
ugaauuacaccagccugcgcagaugcgcagguuuuuu
(((((..(((.(((((..((((.......))))))))))))................)))))((((((((....))))))))..... (-29.10)

Length sequence

: 87

Length match:

78