RyhA_SraH,

cmscan-Rfam

Family :

ArcZ

Id:

RF00081

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. SraH expression is
highly abundant in stationary phase, but low levels could be detected in exponentially growing cells
as well [1]. The function of this RNA is unknown.

Score:

120.3

E-value:

9e-30

From sequence:

1

To sequence:

108

Alignments:

                                                                                                                     NC
                 ::::::::::::::.::::<<<<<<<<_____________________.___>>>>>>>>------------<<<----<<<<_______>>>>>>>:: CS
     RF00081   1 GUGCggccuaAaaa.cagugcuGcGCCcuuuuAaAuCAUCAuAAuaAu.uACGGCgCagcCAcgAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCC 97 
                 GUGCGGCCU+AAAA CAGUGCUG:GCCCUU UAA UCAUCAUAAUAAU UACGGC:CAGCCA+GAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCC
  RyhA_SraH,   1 GUGCGGCCUGAAAAaCAGUGCUGUGCCCUUGUAACUCAUCAUAAUAAUuUACGGCGCAGCCAAGAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCC 99 
                 *************55*********************************999************************************************ PP

                           NC
                 ::::::::: CS
     RF00081  98 GGUCUAgcC 106
                 GGUCUAGCC
  RyhA_SraH, 100 GGUCUAGCC 108
                 ********* PP

RNAfold
>RyhA_SraH,
ugcggccugaaaaacagugcugugcccuuguaacucaucauaauaauuua
cggcgcagccaagauuucccugguguuggcgcaguauucgcgcaccccgg
ucuagcc
...((((((.....))).((((((((...((((..............))))))))))))..........((((.((..((((.......)))))).))))....))) (-27.50)

Length sequence

: 107

Length match:

106