RyjA_SraL,

cmscan-Rfam

Family :

sraL

Id:

RF01408

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

151.2

E-value:

1.6e-36

From sequence:

4

To sequence:

144

Alignments:

                                                                                                                     NC
                 :(((((((,,,,,<<_____>>,,,,,,,,<<<<___>>>>,,))))))),(((,<<<____>>><<<<<<______>>>>>>,,,,,,,,,,))),,, CS
     RF01408   1 gucagCaCAAACCGGAACCUCCaucAaaugCuCgAuacGaGGGGuGcugauGuCGGGGGAAACCCuCccGcaaaucAgCggGaUAaaGcgAAAGaCaAa 99 
                 +UCA:CAC AACCGGAACCUCCA+CA +UGCUC:A A:GAGG GUG:UGA+GUCGGGGGAAACCCUCC:G:+ A+CA:C:GGAUA+AG+GAAAGACAAA
  RyjA_SraL,   4 AUCAACACCAACCGGAACCUCCACCACGUGCUCGA-AUGAGGUGUGUUGACGUCGGGGGAAACCCUCCUGUGUACCAGCGGGAUAGAGAGAAAGACAAA 101
                 **********************************9.8************************************************************** PP

                                                              NC
                 ,,,,,,,,,.,<<<<<<<<<<<<<______>>>>>>>>>>>>>: CS
     RF01408 100 gaCcGgAaa.caaaCuaaaGCGCCuuuaguGGCGCuuuaGuuuU 142
                 GACCGGAAA CAAACUAAAGCGCC+UU GUGGCGCUUUAGUUUU
  RyjA_SraL, 102 GACCGGAAAaCAAACUAAAGCGCCCUU-GUGGCGCUUUAGUUUU 144
                 ***99999889**************99.99************** PP

RNAfold
>RyjA_SraL,
aucaacaccaaccggaaccuccaccacgugcucgaaugagguguguugac
gucgggggaaacccuccuguguaccagcgggauagagagaaagacaaaga
ccggaaaacaaacuaaagcgcccuuguggcgcuuuaguuuug
...........((((......((((.(((......))).))))((((....((.(((....)))((((((......))))))....))....))))....)))).....(((((((((((((.....))))))))))))).. (-44.70)

Length sequence

: 142

Length match:

139