argW

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

61.8

E-value:

2.3e-14

From sequence:

1

To sequence:

72

Alignments:

                                                                                      NC
             (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005  1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71
             G::: ::UAG:U:A+UGG  A:A:CG:::::CU  +AA:::::A+ +GC:GGUUCGA UCC:GC:: :::CA
     argW  1 GUCCUCUUAGUUAAAUGGAuAUAACGAGCCCCUCCUAAGGGCUAAUUGCAGGUUCGAUUCCUGCAGGGGACA 72
             ****************7777**************************************************** PP

RNAfold
>argW
UCCUCUUAGUUAAAUGGAUAUAACGAGCCCCUCCUAAGGGCUAAUUGCAG
GUUCGAUUCCUGCAGGGGACA
(((((...((((........)))).(((((.......)))))...((((((.......))))))))))).. (-21.40)

Length sequence

: 71

Length match:

70