glnW

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

62.7

E-value:

1.2e-14

From sequence:

1

To sequence:

72

Alignments:

                                                                                      NC
             (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005  1 GgagauaUAGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71
             :G:G:UAU GC::AG GGUA::GC+:CGG:+UU+ A :CCG: +  C:C:GGUUCGAAUCC:G:UA:C:C:+
     glnW  1 UGGGGUAUCGCCAAGCGGUAAGGCACCGGUUUUUGAUACCGGCAUuCCCUGGUUCGAAUCCAGGUACCCCAG 72
             *******************************************999************************** PP

RNAfold

>glnW
GGGGUAUCGCCAAGCGGUAAGGCACCGGUUUUUGAUACCGGCAUUCCCUG
GUUCGAAUCCAGGUACCCCAG
((((((..(((.........))).(((((.......))))).....(((((.......))))))))))).. (-26.80)

Length sequence

: 71

Length match:

70