Alignments: NC
{{{{{{{{,,,,,,{{{{{{{{{{-----{{{,,{{{{{{{{{{{[[,,,,,((((<<<________>>>,,,,,<<<<<<<--<<<_______>>>--- CS
RF02541 1 ggucaagcuauuAAggGCgcgcGGuGGAUGCCUuGGcgccgggaggCGAuGAgGGaCGcGguaagCugCGAuAAGCcccGgggAGccGcaAacAggCuuu 100
GGU:AAGC A UAA::G::C:CGGUGGAUGCC UGGC:::::GAGGCGAUGA:GGACG:G UAA CU:CGAUAAGC::CGG: AG::G +A A::C UU
rrlC 1 GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUU 100
*************************************************************************************************888 PP
NC
-.->>>>>>>,,,)))),,,<<<____>>><<<<<<<______>>>>>>>,<<<<<<<<<_________>>>>>>>>>,]],,,<<<<<<-----<<___ CS
RF02541 101 G.AccCgggGAUuuCCcAAUgGGGaAACCcgcccgggguaauacccgggcAcccccggccGAAuacAUAggccgggggaGcaAACccgGgGAAcUGaAAC 199
A:CCG::GAUUUCC:AAUGGGGAAACCC:::::G: ++ :C:::::A:C:::::C:GAAU CAUA:G:::::G:+GC+AACC:GGGGAACUGAAAC
rrlC 101 AuAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGU--UUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAAC 198
77***********************************..6778********************************************************* PP
NC
_>>------>>>>>->,,,,,,,,,<<____>>,,{<<<<<-----<<_____>>---->>>>>,,[[[[,,,,<<<<<<<________>>>>>>>,,,, CS
RF02541 200 AuCUaAGUAcCcggAGGAAAAGAAAgcAAaagcgAuuCCccuAGUAGcGGCGAgCGAAaggGGaauaGcCcAAACcggggguuauuguucccccgGGGUu 299
AUCUAAGUACCC:GAGGAAAAGAAA:CAA G:GAUUCCCC AGUAGCGGCGAGCGAA+GGGGA AGCCCA
rrlC 199 AUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCA---------------------------- 270
**********************************************************************98............................ PP
v v NC
,,(((-(((((-------(((((((((((((-(((,,,<<<<<______>>>>>,,<___>,<<<_______>>>,,,)))---)))))))))))))--) CS
RF02541 300 gugGGacccccaaauuaagagccccccggcuAgccGAAcggccUGGAAaggccgaCCauAGagGGUGAuAGuCCcGUAggcgaAagccggggggcucuug 399
:::C + +A+:A ::::::: :UAG::GAA::G:CUGGAAAG:C::+C:AUA:AGGGUGA AG+CCCGUA::C AAA: ::::::: U:U
rrlC 271 ------GAGCCUG--AAUCAGUAUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUAUUGUGA 362
......9999988..899*********************************************************************************9 PP
NC
))))---))),,,,,<<<<<<<<<_______>>>>>>>>>,,,,,,.<<<<<______>>>>>,,]]]],,},,}}-}}}}}}}-}},,,,,,,,,,,,, CS
RF02541 400 gggguauCCcgAGUAgggCggggcAcGuGaAgccccGcccGAAuau.gggggGACCAccccccAAGgCuAAaUAcuccccggcgACCGAUAGuGaAcuAG 498
G:::+AU GAGUA:G:C:GG::ACGUG ::CC:G:C:GAAUAU GG:GGGACCA+CC:CCAAGGCUAAAUACUCC:::::GACCGAUAGUGAAC AG
rrlC 363 GCUCGAU---GAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUgGGAGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAG 459
9999998...**********************************996889************************************************** PP
NC
,,<<____>>,,,,}},,,,,,,,,<<<<_____>>>>,,,,,,,,,,,,,}-----}}}}}}}}}},,,,,{,<<<<<<<<<<<________>>>>>>> CS
RF02541 499 UACCGUGAGGGAAAGGUGAAAAGaACCCcggugAgGGGAGUGAAAuAGaaCCUGAAACCgcgcGCccACAAgcaGucGcggcccgauuuuaaucgggccg 598
UACCGUGAGGGAAAGG GAAAAGAACCCCGG+GAGGGGAGUGAAA AGAACCUGAAACCG:G::C::ACAAGCAGU G:::C:CG UUA+ CG:G:::
rrlC 460 UACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACG--CUUAGGCGUGUGA 557
*************************************************************************************..667777******* PP
v v NC
>>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<_____>>>-->>>>,,,<<____>>,<<<<<_____>>>>>,,, CS
RF02541 599 CggCGUcCcUUUUGuAuAAgGggcCggCGAgUugccgcgcgcggCaAGguUAAgccugauaggcGuAgcCGuAGcGAAAgCGcGuCcgAAuAgGgCgauu 698
C GCGU C:UUUUGUAUAA:G G:C:GCGA UU::: :::G::GCAAGGUUAA:C +AUA G:G+AGCCG+AG:GAAA:CG:GUC:+AA :GGC:+U+
rrlC 558 CUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC-GAAUA-GGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUA 655
******************************************************9.67777.99************************************ PP
NC
,))))))))))))),,[[-[---[[[[[[,,,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<-<<<<<________>> CS
RF02541 699 AGucgcgcgcggcaGACcCGAAACcggGuGAuCuaccCauggcCAGGguGAAgccgggcUAAagcccgguGGAGgcCCGAACccacgcccGUUGAAAAgg 798
AGU::C::: :::AGACCCGAAACC:GGUGAUC A:CCAUG :CAGG:UGAAG::: G:UAA+:C :::UGGAGG:CCGAACC:AC::::GUUGAAAA::
rrlC 656 AGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAU 755
**************************************************************************************************** PP
NC
>>>>>>,,)-))))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<<--<<<<<<<< CS
RF02541 799 gcgggGAUGAgcuguGgguaGgGGcGAAAggCCAAUCaAaCccgGaGAUAGCUgGUUCUCccCGAAAugccuUuAGgggcaGCgucgggcgauccccccc 898
::G:GGAUGA: UGUGG:U GGGG:GAAAG:CCAAUCAAACC:GGAGAUAGCUGGUUCUCCCCGAAA::::UUUAGG::::GC:UCG:G:++UC::C:CC
rrlC 756 UAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCC 855
**************************************************************************************************** PP
v v NC
<<<----<<<---<<<-<<<<---<<<<<<<____.>>>>>->>--->>>>->>>-->>->---->>>>>>>.>>>-->>>>>>>>->,,,<<<<<<<<< CS
RF02541 899 ggcGGUAgaGCACuggaugggcuAgGgggccuaaa.ggccuACcaAacccaaccaAACuccGAAUgccgggg.gggaaagcccggcAGucAgaccgcggg 996
GG GGUAGAGCACUG +U:GGC+AGGG:G:C + + G:C:UACCAA CC:A CAAACU CGAAU CCGG:G ::G++A:C:CGG:AG+CA:AC::CGGG
rrlC 856 GGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCcGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGaAUGUUAUCACGGGAGACACACGGCGGG 955
*******************************99989************************************99************************** PP
vv NC
<______>>>>>>>>>>,,,,<<<______>>>,,,((((-(((---(((------(-((((((-----------(((-((((((((((-------(((( CS
RF02541 997 cGaUAAgguccgcggucgAgAGGGaAAcAaCCCAGAcCgcCagcUAAGGuCCCuAAgugcggGcUAAGUGggAAAGGcuGuggggccgCuaAgACAaCca 1096
:G+UAA :UCCG::GU:+AGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCC+AAGU:::GG:UAAGUGGGAAA:G:UGU:GG ::C AGACA:CCA
rrlC 956 UGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCA 1055
**************************************************************************************************** PP
vv NC
(,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))))--------------------)))))))))) CS
RF02541 1097 GGAgGUUGGCUUAGAAGCAGCCAUCcUuuAAaGAguGCGUAAuAGCUCACugGuCaAGcggccccgCgCCGAaAAUguaaCGGGGCUcAAgCccgccaCC 1196
GGA:GUUGGCUUAGAAGCAGCCAUC:UUUAAAGA++GCGUAAUAGCUCACUGG:C+AG:: CC:GC:C:GAA AUGUAACGGGGCU AA:CC:::CACC
rrlC 1056 GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCU-AAACCAUGCACC 1154
***************************************************************************************.************ PP
vv vv NC
---)))))))<<<<<<<<._____>>>>>>>>,,,,]]]]]]<-<<<<<<<.<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,, CS
RF02541 1197 GAAgcugcGggcucgcgg.uuuaaccgcgagcGGUAGggGAGCguuccgcc.cgcgguGAAggcgccccGuaAggggcgccGGAgcgggcggaaGuGAga 1294
GAAGCUGCGG:: C ::G UU++ C:: G ::GGUAGGGGAGCGUUC:G ::C+G GAA:G: ::C:GU+A:G:: :C:GGAG:: C:GAAGUG GA
rrlC 1155 GAAGCUGCGGCAGCGACGcUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAaGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGA 1254
******************888899*************************9999*********************************************** PP
v NC
,,}}}}}}{{-----{{,,,,,<<<<<<_______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[[,<<-- CS
RF02541 1295 AUGccGgcacgAGUAgCGAuAAgggggGUGAGAAuCcccccCGCCGaAAgcCcAAGGuUUCCuggguAAgGuUaaUCcgcccaGGGUuAGuCGggaCCUA 1394
AUGC:G:CA:+AGUA:CGAUAA:G:GGGUGA AA CCC:C:CGCCG AAG:CCAAGG UUCCUG :+AA:GUUAAUC:G: CAGGGU AGUCG: +CCUA
rrlC 1255 AUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUA 1354
**************************************************************************************************** PP
v NC
-<<<-<-<<<____>>>->->>>--->>,,,<<<<<________>>>>>,,(((((((((((-----((--((((((---((((--(((--(((((<<<< CS
RF02541 1395 AGgcGaGGccGAaAggCGuAgcCGAUGGaaAgcgGGUuAAuAuUCCcgcaCcgcccggggccuuuaagcgacGgggcGACgcagaaggcuaggcgcgcgg 1494
AG:CGAGGCCGAAAGGCGUAG:CGAUGG+AA:C:GGUUAAUAUUCC:G:AC::: :G:::C: GCGA:G:GG GACG:AGAAGGCUA:G::::C:G
rrlC 1355 AGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACU-----GCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCG 1449
**************************************************************.....********************************* PP
vv vv NC
<<__________>>>>>><<--<<<<---<<<.-<<<<<<<-<<_____>>>>>>>>>---.>>>--->>>>--->>,<<<<<<<____>>>>>>>,,)) CS
RF02541 1495 gcuguuGGaagugcccgcccaagcccuuaggc.uggggggcAGguAAAucCgccccccaau.gccgaggggcgaugggccgccgcuuaagcggcggaggc 1592
G: G+ GG++GU:CC:G:::AA:C::+UA:GC + :::::CAGG+AAAUCCG::::: A+ GC:GAG::G:GAU:: :C:CU+ +G:G: AG::
rrlC 1450 GGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCuGGUUUUCCAGGCAAAUCCGGAAAAUCAAgGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCA 1549
********************************999999999**********99999998888************************************** PP
v v NC
)))---)))---))))--------))))))--))---.)))))))))))]]]],,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{ CS
RF02541 1593 gccgaagccaugcugcCaaGAAAAgcccCgaagcuaa.ggccccgggcgccCGUACCguAAACCGACACAGGUgGgcagGgaGAGaAucCcaAGGCGcuc 1691
:C:+A+GCC UGCU:CCA GAAAA CC:C:AAGC++ :G:::C: ::: :CGUACC +AAACCGACACAGGUGG:CAGG:AGAGAAU:CCAAGGCGCU:
rrlC 1550 ACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCaGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUU 1649
***********************************989************************************************************** PP
vv vv NC
{{{----{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<................<<<<<<____>>>>>>...> CS
RF02541 1692 GgGagAAcccuggucAAGgAACUCGGCAAAaUagcccCGUAccUUcGggAgAAGgggcgCCccc................ccgggcguaagcccgg...g 1772
G:GAGAAC:C:GGU:AAGGAACU GGCAAAAU+G::CCGUA:CUUCGG:AGAAGG::C:C:::: G::CGU G::C :
rrlC 1650 GAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUauguaggugaagcgacUUGCUCGU-GGAGCU-gaaA 1747
****************************************************************997776666666555444444433.244444.488* PP
NC
>>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<< CS
RF02541 1773 ggGGccGCAgagAauaGGcccgggCGACUGuUUAccAAAAaCACAggccucugCuAagucGuAAgacgAuGUAuaggggcuGAcGCCUGCCCGGUgCcgG 1872
:::G:CG AGA A AG::::: :C:ACUGUUUA++AAAAACACAG::CU:UGC+AA::CG+AAG::GA+GUAUA:GG::UGACGCCUGCCCGGUGCCGG
rrlC 1748 UCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGG 1847
**************************************************************************************************** PP
vv vv vv vv NC
--<<<---<<-<<<<<<<--<<____>>--->>>>>>>->>--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,<---------<< CS
RF02541 1873 AAGGuUAAgggccgggGuuAgcGcaAgcgAAgCcccggAccgAAgCCCcgGuAAACGGCGgCCGUAACUAUAACGGuCCUAAGGUAGCGAAAUUCCUUGu 1972
AAGGUUAA G :G:GU AGCGCAAGCGAAGC:C: A GAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGU
rrlC 1848 AAGGUUAAUUGAUGGGGUCAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGU 1947
**************************************************************************************************** PP
NC
<<<<_____>>>>>>>,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}}}}----}}},,,,<<<<<________>>>>>,,{{{{ CS
RF02541 1973 CGGgUAAGUuCCGaCCuGCACGAAuGGCgUAACGAcccgggCgCUGuCUCgaccagggaCcCgGcGAAAguguAgUgccgGUgAAGAUGCcggcUaCcCg 2072
CGGGUAAGUUCCGACCUGCACGAAUGGCGUAA:GA: :::::GCUGUCUC:ACC:G:GAC:C:G:GAAA:UG+A U: C:GUGAAGAUGC:G :UACCC:
rrlC 1948 CGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCG 2047
**************************************************************************************************** PP
v NC
{{{{-{{{-{{,,,,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<<------<<<<<<<<___ CS
RF02541 2073 CggcugGACgGAAAGACCCCGUGgAcCUUUACUguAgccuggcauUGgcccccggcgcggcccGUguAGgAUAgGuGGGAGgCuuuGAAgccggggcgcu 2172
CGGC+:GACGGAAAGACCCCGUG:ACCUUUACU:UAGC::G:CA UG::C::::: : :: ::GUGUAGGAUAGGUGGGAGGCUUUGAA:::::G:CGC+
rrlC 2048 CGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCC 2147
**************************************************************************************************** PP
v NC
_>>>>>>>>--->>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<-<<<<<<_____>>>>>>>>>,,,,,)))))))----)))),,< CS
RF02541 2173 AgccccggcGGAGcCaacguUGAaAUACCaCcCgggccgcgccgggggcCUAACccagccccguaAuccggggcggGGACagugccagguGGGcAGUUUG 2272
AG:C:::::GGAGCC+AC UUGAAAUACCACCC:: :: : :::::G::CUAAC:: :CCCGU AUCCGGG: ::GGACAGUG:C::GUGGG:AGUUUG
rrlC 2148 AGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUGGACCCGUGAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUG 2247
**************************************************************************************************** PP
NC
<<<_____>>>><<<<<<___________>>>>>>{,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,, CS
RF02541 2273 aCuGGGGCgGuCgCCUCCuAAAgaGUAACGGAGGcGcgCaAAGGuuccCUCAgcgcGguuGGaAAcCgcgcguaGAGcGcAAaggCAuAAGggagCuUgA 2372
ACUGGGGCGGUC:CCUCCUAAAGAGUAACGGAGG:GC:C+AAGGUU::CU:A:C::G:U+GGA A:C::G:G +:AG:GCAA+G:CAUAAG::AGCUUGA
rrlC 2248 ACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGA 2347
**************************************************************************************************** PP
NC
<<<<<<<<<______>>>>>>>>>,<<<____>>.>,]],,,,,,,,,,<<<<<<<-<<________>>>>>>>>>,,,,,},,,,,,}}}}}--}}}}} CS
RF02541 2373 CuGcccGacugACAaguCgggCaGaggCGAAAGc.cGGccuUAGUGAUCCggcGGcuccgagUGGaAgggCCgucGCUCAACGGAUAAAAGgUACcCCGG 2471
CUGC::G::UGAC ::C::GCAG+:GCGAAAGC :GG:C+UAGUGAUCCGG:GG:UC:GA+UGGAA:G:CC:UCGCUCAACGGAUAAAAGGUAC:CCGG
rrlC 2348 CUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCuAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGG 2447
*********************************978**************************************************************99 PP
v v NC
},,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->> CS
RF02541 2472 GGAUAACAGGCugAucccccCCAAGaGUuCAuAuCGACGggggggUUUgGCACCUCGAUGUCgGCUCauCgCAUCCUGGGgCuGgAGuAgGuCCCAAGGG 2571
G AUAACAGGCUGAU:CC:CCCAAGAGUUCAUAUCGACGG:GG:GUUUGGCACCUCGAUGUCGGCUCAUC:CAUCCUGG GCUG+AGUAGGU CCAAGGG
rrlC 2448 G-AUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGAGCUGAAGUAGGUCCCAAGGG 2546
7.9************************************************************************************************* PP
NC
,<<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},,,,((((((((--((((,, CS
RF02541 2572 UucGGCUGUUCGCCgaUUAAAGcGguACGuGAGCuGGGUUcAGaaCGUCGUGAGACAGuuCGGUCCcUAUCcgccGcGgGcGuaGGaggccUGAggGgau 2671
U::GGCUGUUCGCC::UUAAAG:GGUACG+GAGCUGGGUU+AGAACGUCGUGAGACAGUUCGGUCCCUAUC:GCCG:GGGCG +GGAG::CUGAGGGG +
rrlC 2547 UAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGG 2646
**************************************************************************************************** PP
NC
<<<<<<<_______________>>>>>>><<<<<<---<<<----<<<<<<<<<<<____>>>>>>-->>>>>---->>>->>>>>>,,<<<----<<<< CS
RF02541 2672 ccgccccUAGUACGAGAGGACCggggcgggCggaCCucugGUGuacCgGuuGucgcGCcAgcggCauugCcGgGUAGCcauGuccGcaaggGAUAAcCGC 2771
C::C:CCUAGUACGAGAGGACCGG:G::G:CG:A:C+CU:GUGU C:GGUUGUC::GCCA::GGCA UGCC:GGUAGC:A+:U:CG:AA :GAUAA::GC
rrlC 2647 CUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGC 2746
**************************************************************************************************** PP
vv v NC
<___________>>>>>---->>>,))))------)))))))),,<<<....._____>>>.,(--((((<<<<<_______>>>>>,,,,<<<<<<<<< CS
RF02541 2772 UGAAaGCAUCUAAGCGgGAAgCccacCccAAGAuaAggccuCCcucgg.....uaaauccg.uuaAGgccccuggaAGAcuAccaggUuGAuaGgccggc 2865
UGAAAGCAUCUAAGC::GAA+C: CCCC AGAU AG::CUCCCU::: UAA ::: U AAGG C:U:GAAGAC AC:A:GUUGAUAGGCCGG
rrlC 2747 UGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACuccuuUAAGGGUCcUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGG 2846
************************************************9987555566999789************************************ PP
v vv vv NC
<<--<--<<<<<____>>>>>>--->>>->>>>>->>>,,,))))-),,,}}}}}}}}:: CS
RF02541 2866 gGUGcAAgcgcgGuAAcgcgcguAGCcgAccgguACuaAUaggcCgauaggcuugaccuu 2925
GUG:AA:CGC:G+ A:GCG:: AGC ACCGGUACUAAU CCG AGGCUU:ACCUU
rrlC 2847 UGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU 2906
************************************************************ PP
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