Alignments: NC
{{{{{{{{,,,,,,{{{{{{{{{{-----{{{,,{{{{{{{{{{{[[,,,,,((((<<<________>>>,,,,,<<<<<<<--<<<_______>>>--- CS
RF02541 1 ggucaagcuauuAAggGCgcgcGGuGGAUGCCUuGGcgccgggaggCGAuGAgGGaCGcGguaagCugCGAuAAGCcccGgggAGccGcaAacAggCuuu 100
GGU:AAGC A UAA::G::C:CGGUGGAUGCC UGGC:::::GAGGCGAUGA:GGACG:G UAA CU:CGAUAAGC::CGG: AG::G +A A::C UU
rrlH 1 GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUU 100
*************************************************************************************************888 PP
NC
-.->>>>>>>,,,)))),,,<<<____>>><<<<<<<______>>>>>>>,<<<<<<<<<_________>>>>>>>>>,]],,,<<<<<<-----<<___ CS
RF02541 101 G.AccCgggGAUuuCCcAAUgGGGaAACCcgcccgggguaauacccgggcAcccccggccGAAuacAUAggccgggggaGcaAACccgGgGAAcUGaAAC 199
A:CCG::GAUUUCC:AAUGGGGAAACCC:::::G: ++ :C:::::A:C:::::C:GAAU CAUA:G:::::G:+GC+AACC:GGGGAACUGAAAC
rrlH 101 AuAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGU--UUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAAC 198
77***********************************..6778********************************************************* PP
NC
_>>------>>>>>->,,,,,,,,,<<____>>,,{<<<<<-----<<_____>>---->>>>>,,[[[[,,,,<<<<<<<________>>>>>>>,,,, CS
RF02541 200 AuCUaAGUAcCcggAGGAAAAGAAAgcAAaagcgAuuCCccuAGUAGcGGCGAgCGAAaggGGaauaGcCcAAACcggggguuauuguucccccgGGGUu 299
AUCUAAGUACCC:GAGGAAAAGAAA:CAA G:GAUUCCCC AGUAGCGGCGAGCGAA+GGGGA +AGCCCA
rrlH 199 AUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGGAGCCCA---------------------------- 270
**********************************************************************98............................ PP
v v NC
,,(((-(((((-------(((((((((((((-(((,,,<<<<<______>>>>>,,<___>,<<<_______>>>,,,)))---)))))))))))))--) CS
RF02541 300 gugGGacccccaaauuaagagccccccggcuAgccGAAcggccUGGAAaggccgaCCauAGagGGUGAuAGuCCcGUAggcgaAagccggggggcucuug 399
:::C + +A+:AG: ::::: :UAG::GAA::G:CUGGAAAG:C::+C:AUA:AGGGUGA AG+CCCGUA::C AAA: ::::: :CU:U
rrlH 271 ------GAGCCUG--AAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGA 362
......9999988..899*********************************************************************************9 PP
NC
))))---))),,,,,<<<<<<<<<_______>>>>>>>>>,,,,,,<<<<<______>>>>>,,]]]],,},,}}-}}}}}}}-}},,,,,,,,,,,,,, CS
RF02541 400 gggguauCCcgAGUAgggCggggcAcGuGaAgccccGcccGAAuaugggggGACCAccccccAAGgCuAAaUAcuccccggcgACCGAUAGuGaAcuAGU 499
G:::+AU GAGUA:G:C:GG::ACGUG ::CC:G:C:GAAUAUGG:GGGACCA+CC:CCAAGGCUAAAUACUCC:::::GACCGAUAGUGAAC AGU
rrlH 363 GCUCGAU---GAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGU 459
9999998...****************************************************************************************** PP
NC
,<<____>>,,,,}},,,,,,,,,<<<<_____>>>>,,,,,,,,,,,,,}-----}}}}}}}}}},,,,,{,<<<<<<<<<<<________>>>>>>>> CS
RF02541 500 ACCGUGAGGGAAAGGUGAAAAGaACCCcggugAgGGGAGUGAAAuAGaaCCUGAAACCgcgcGCccACAAgcaGucGcggcccgauuuuaaucgggccgC 599
ACCGUGAGGGAAAGG GAAAAGAACCCCGG+GAGGGGAGUGAAA AGAACCUGAAACCG:G::C::ACAAGCAGU G:::C::G UUA+ C::G:::C
rrlH 460 ACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCAUG--CUUAGGCGUGUGAC 557
************************************************************************************..667777******** PP
v v NC
>>>,,<<<<________>>>>{{{{{{,,,,(((((((((((((,,<<<<--<<<_____>>>-->>>>,,,<<____>>,<<<<<_____>>>>>,,,, CS
RF02541 600 ggCGUcCcUUUUGuAuAAgGggcCggCGAgUugccgcgcgcggCaAGguUAAgccugauaggcGuAgcCGuAGcGAAAgCGcGuCcgAAuAgGgCgauuA 699
GCGU C:UUUUGUAUAA:G G:C:GCGA UU::: :::G::GCAAGGUUAA:C +AUA G:G+AGCCG+AG:GAAA:CG:GUC:+AA :GGC:+U+A
rrlH 558 UGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACC-GAAUA-GGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAA 655
*****************************************************9.67777.99************************************* PP
NC
))))))))))))),,[[-[---[[[[[[,,,((((((((((((,<<<<---<<<<<<<____>>>>>>>---->>>>,,,<<<-<<<<<________>>> CS
RF02541 700 GucgcgcgcggcaGACcCGAAACcggGuGAuCuaccCauggcCAGGguGAAgccgggcUAAagcccgguGGAGgcCCGAACccacgcccGUUGAAAAggg 799
GU::C::: :::AGACCCGAAACC:GGUGAUC A:CCAUG :CAGG:UGAAG::: G:UAA+:C :::UGGAGG:CCGAACC:AC::::GUUGAAAA:::
rrlH 656 GUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUU 755
**************************************************************************************************** PP
NC
>>>>>,,)-))))))))))),<<<_____>>>,,,,,,]]]]]]------]-]],,[[[[[[,,,,<<<<<____>>>>>,<<<<<<<<--<<<<<<<<< CS
RF02541 800 cgggGAUGAgcuguGgguaGgGGcGAAAggCCAAUCaAaCccgGaGAUAGCUgGUUCUCccCGAAAugccuUuAGgggcaGCgucgggcgaucccccccg 899
:G:GGAUGA: UGUGG:U GGGG:GAAAG:CCAAUCAAACC:GGAGAUAGCUGGUUCUCCCCGAAA::::UUUAGG::::GC:UCG:G:+ UC::C:CCG
rrlH 756 AGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAACUCAUCUCCG 855
**************************************************************************************************** PP
v v NC
<<----<<<---<<<-<<<<---<<<<<<<____.>>>>>->>--->>>>->>>-->>->---->>>>>>>.>>>-->>>>>>>>->,,,<<<<<<<<<< CS
RF02541 900 gcGGUAgaGCACuggaugggcuAgGgggccuaaa.ggccuACcaAacccaaccaAACuccGAAUgccgggg.gggaaagcccggcAGucAgaccgcgggc 997
G GGUAGAGCACUG +U:GGC+AGGG:G:C + + G:C:UACCAA CC:A CAAACU CGAAU CCGG:G ::G++A:C:CGG:AG+CA:AC::CGGG:
rrlH 856 GGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCcGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGaAUGUUAUCACGGGAGACACACGGCGGGU 955
******************************99989************************************99*************************** PP
vv NC
______>>>>>>>>>>,,,,<<<______>>>,,,((((-(((---(((------(-((((((-----------(((-((((((((((-------((((( CS
RF02541 998 GaUAAgguccgcggucgAgAGGGaAAcAaCCCAGAcCgcCagcUAAGGuCCCuAAgugcggGcUAAGUGggAAAGGcuGuggggccgCuaAgACAaCcaG 1097
G+UAA :UCCG::GU:+AGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCC+AAGU:::GG:UAAGUGGGAAA:G:UGU:GG ::C AGACA:CCAG
rrlH 956 GCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAG 1055
**************************************************************************************************** PP
vv NC
,<<<--<<<_________>>>-->>><___><---<<______>>->,)))))---)))))))))))))--------------------))))))))))- CS
RF02541 1098 GAgGUUGGCUUAGAAGCAGCCAUCcUuuAAaGAguGCGUAAuAGCUCACugGuCaAGcggccccgCgCCGAaAAUguaaCGGGGCUcAAgCccgccaCCG 1197
GA:GUUGGCUUAGAAGCAGCCAUC:UUUAAAGA++GCGUAAUAGCUCACUGG:C+AG:: CC:GC:C:GAA AUGUAACGGGGCU AA:CC:::CACCG
rrlH 1056 GAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCU-AAACCAUGCACCG 1154
**************************************************************************************.************* PP
vv vv NC
--)))))))<<<<<<<<._____>>>>>>>>,,,,]]]]]]<-<<<<<<<.<<<------<<<<<<<<____>>>>>>>>--->>>>>>>>>>-->,,,, CS
RF02541 1198 AAgcugcGggcucgcgg.uuuaaccgcgagcGGUAGggGAGCguuccgcc.cgcgguGAAggcgccccGuaAggggcgccGGAgcgggcggaaGuGAgaA 1295
AAGCUGCGG:: C ::G UU++ C:: G ::GGUAGGGGAGCGUUC:G ::C+GUGAA:G: ::C:GU+A:G:: :C:GGAG:: C:GAAGUG GAA
rrlH 1155 AAGCUGCGGCAGCGACGcUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAaGCCUGUGAAGGUGUACUGUGAGGUAUGCUGGAGGUAUCAGAAGUGCGAA 1254
*****************888899*************************9999************************************************ PP
v NC
,}}}}}}{{-----{{,,,,,<<<<<<_______>>>>>>{{{{,,,,{{{{,,{{,,,<<<<<<---<<_____>>->>>>>>,,,,,,[[[[,<<--- CS
RF02541 1296 UGccGgcacgAGUAgCGAuAAgggggGUGAGAAuCcccccCGCCGaAAgcCcAAGGuUUCCuggguAAgGuUaaUCcgcccaGGGUuAGuCGggaCCUAA 1395
UGC:G:CA:+AGUA:CGAUAA:G:GGGUGA AA CCC:C:CGCCG AAG:CCAAGG UUCCUG :+AA:GUUAAUC:G: CAGGGU AGUCG: +CCUAA
rrlH 1255 UGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAA 1354
**************************************************************************************************** PP
v NC
<<<-<-<<<____>>>->->>>--->>,,,<<<<<________>>>>>,,(((((((((((-----((--((((((---((((--(((--(((((<<<<< CS
RF02541 1396 GgcGaGGccGAaAggCGuAgcCGAUGGaaAgcgGGUuAAuAuUCCcgcaCcgcccggggccuuuaagcgacGgggcGACgcagaaggcuaggcgcgcggg 1495
G:CGAGGCCGAAAGGCGUAG:CGAUGG+AA:C:GGUUAAUAUUCC:G:AC::: :G:::C: GCGA:G:GG GACG:AGAAGGCUA:G::::C:GG
rrlH 1355 GGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACU-----GCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGG 1449
*************************************************************.....********************************** PP
vv vv NC
<__________>>>>>><<--<<<<---<<<.-<<<<<<<-<<_____>>>>>>>>>---.>>>--->>>>--->>,<<<<<<<____>>>>>>>,,))) CS
RF02541 1496 cuguuGGaagugcccgcccaagcccuuaggc.uggggggcAGguAAAucCgccccccaau.gccgaggggcgaugggccgccgcuuaagcggcggaggcg 1593
: G+ GG++GU:CC:G:::AA:C::+UA:GC + :::::CAGG+AAAUCCG::::: A+ GC:GAG::G:GAU:: :C:CU+ +G:G: AG:::
rrlH 1450 GCGACGGUUGUCCCGGUUUAAGCGUGUAGGCuGGUUUUCCAGGCAAAUCCGGAAAAUCAAgGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAA 1549
*******************************999999999**********99999998888*************************************** PP
v v NC
))---)))---))))--------))))))--))---.)))))))))))]]]],,}},,,,,<<______>>,}}}},<<<<_____>>>>,,}}}},,{{ CS
RF02541 1594 ccgaagccaugcugcCaaGAAAAgcccCgaagcuaa.ggccccgggcgccCGUACCguAAACCGACACAGGUgGgcagGgaGAGaAucCcaAGGCGcucG 1692
C:+A+GCC UGCU:CCA GAAAA CC:C:AAGC++ :G:::C: ::: :CGUACC +AAACCGACACAGGUGG:CAGG:AGAGAAU:CCAAGGCGCU:G
rrlH 1550 CAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCaGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUG 1649
**********************************989*************************************************************** PP
vv vv NC
{{----{{{{{{{{-{{{,,,,,,,,,,,,,,<<<<<---<<____>>---->>>>><<<<<<................<<<<<<____>>>>>>...>> CS
RF02541 1693 gGagAAcccuggucAAGgAACUCGGCAAAaUagcccCGUAccUUcGggAgAAGgggcgCCccc................ccgggcguaagcccgg...gg 1773
:GAGAAC:C:GGU:AAGGAACU GGCAAAAU+G::CCGUA:CUUCGG:AGAAGG::C:C:::: G::CGU G::C ::
rrlH 1650 AGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUauguaggugaagcgacUUGCUCGU-GGAGCU-gaaAU 1747
***************************************************************997776666666555444444433.244444.488** PP
NC
>>>><___>,,,,,,,[[[[[[[[[,,<<<_________>>>,,<<<<<<<<<--<<<<____>>>>-->-->>>>>>>>,,((((,<<<--<<<<<<<- CS
RF02541 1774 gGGccGCAgagAauaGGcccgggCGACUGuUUAccAAAAaCACAggccucugCuAagucGuAAgacgAuGUAuaggggcuGAcGCCUGCCCGGUgCcgGA 1873
::G:CG AGA A AG::::: :C:ACUGUUUA++AAAAACACAG::CU:UGC+AA::CG+AAG::GA+GUAUA:GG::UGACGCCUGCCCGGUGCCGGA
rrlH 1748 CAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGA 1847
**************************************************************************************************** PP
vv vv vv vv NC
-<<<---<<-<<<<<<<--<<____>>--->>>>>>>->>--->>>>>>>>-->>>>><<<<<<_______>>>>>><___>,,,,,<---------<<< CS
RF02541 1874 AGGuUAAgggccgggGuuAgcGcaAgcgAAgCcccggAccgAAgCCCcgGuAAACGGCGgCCGUAACUAUAACGGuCCUAAGGUAGCGAAAUUCCUUGuC 1973
AGGUUAA G :G:GUUAGCGCAAGCGAAGC:C: A GAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUC
rrlH 1848 AGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUC 1947
**************************************************************************************************** PP
NC
<<<_____>>>>>>>,,,,,,,,,)))),,,]]-]]]]]]],,,,}}}-}}}}}}}}-}}}}}}----}}},,,,<<<<<________>>>>>,,{{{{{ CS
RF02541 1974 GGgUAAGUuCCGaCCuGCACGAAuGGCgUAACGAcccgggCgCUGuCUCgaccagggaCcCgGcGAAAguguAgUgccgGUgAAGAUGCcggcUaCcCgC 2073
GGGUAAGUUCCGACCUGCACGAAUGGCGUAA:GA: :::::GCUGUCUC:ACC:G:GAC:C:G:GAAA:UG+A U: C:GUGAAGAUGC:G :UACCC:C
rrlH 1948 GGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGC 2047
**************************************************************************************************** PP
v NC
{{{-{{{-{{,,,,,,{{{{-{{{{{{{,((((---(((((((,,<<<<<<<<<<<<<<<<<<---------<<<<<--<<<------<<<<<<<<____ CS
RF02541 2074 ggcugGACgGAAAGACCCCGUGgAcCUUUACUguAgccuggcauUGgcccccggcgcggcccGUguAGgAUAgGuGGGAGgCuuuGAAgccggggcgcuA 2173
GGC+:GACGGAAAGACCCCGUG:ACCUUUACU:UAGC::G:CA UG::C::::: : :: ::GUGUAGGAUAGGUGGGAGGCUUUGAA:::::G:CGC+A
rrlH 2048 GGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCA 2147
**************************************************************************************************** PP
v NC
>>>>>>>>--->>>------------>>>>>>>>>>>>>>>>>>>>>>>,,,<<<-<<<<<<_____>>>>>>>>>,,,,,)))))))----)))),,<< CS
RF02541 2174 gccccggcGGAGcCaacguUGAaAUACCaCcCgggccgcgccgggggcCUAACccagccccguaAuccggggcggGGACagugccagguGGGcAGUUUGa 2273
G:C:::::GGAGCC+AC UUGAAAUACCACCC:: :: : :::::G::CUAAC::+ :CCCGUAAUCCGGG: ::GGACAGUG:C::GUGGG:AGUUUGA
rrlH 2148 GUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGA 2247
**************************************************************************************************** PP
NC
<<_____>>>><<<<<<___________>>>>>>{,[[,,,,((((((<<-<<<<<<_______>>>>>>--->><<______>>,,,,)))))),,,,< CS
RF02541 2274 CuGGGGCgGuCgCCUCCuAAAgaGUAACGGAGGcGcgCaAAGGuuccCUCAgcgcGguuGGaAAcCgcgcguaGAGcGcAAaggCAuAAGggagCuUgAC 2373
CUGGGGCGGUC:CCUCCUAAAGAGUAACGGAGG:GC:C+AAGGUU::CU:A:C::G:U+GGA A:C::G:G +:AG:GCAA+G:CAUAAG::AGCUUGAC
rrlH 2248 CUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGAC 2347
**************************************************************************************************** PP
NC
<<<<<<<<______>>>>>>>>>,<<<____>>>,]],,,,,,,,,,<<<<<<<-<<________>>>>>>>>>,,,,,},,,,,,}}}}}--}}}}}}, CS
RF02541 2374 uGcccGacugACAaguCgggCaGaggCGAAAGccGGccuUAGUGAUCCggcGGcuccgagUGGaAgggCCgucGCUCAACGGAUAAAAGgUACcCCGGGG 2473
UGC::G::UGAC ::C::GCAG+:GCGAAAGC:GG:C+UAGUGAUCCGG:GG:UC:GA+UGGAA:G:CC:UCGCUCAACGGAUAAAAGGUAC:CCGGGG
rrlH 2348 UGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGG 2447
**************************************************************************************************** PP
NC
,,,,,,,<<<-<<<<<<<<---<<_______>>--->>>>>>>-->>>>,,,,,,,,,,(((((((((((,,<<-<<<<<<______>>>>>>--->>,< CS
RF02541 2474 AUAACAGGCugAucccccCCAAGaGUuCAuAuCGACGggggggUUUgGCACCUCGAUGUCgGCUCauCgCAUCCUGGGgCuGgAGuAgGuCCCAAGGGUu 2573
AUAACAGGCUGAU:CC:CCCAAGAGUUCAUAUCGACGG:GG:GUUUGGCACCUCGAUGUCGGCUCAUC:CAUCCUGGGGCUG+AGUAGGUCCCAAGGGU:
rrlH 2448 AUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUA 2547
**************************************************************************************************** PP
NC
<<<<_____>>>>>,,,,,)))))--)--))))-),,,,,<<<<<<<____>>>->>>>,,,,}}--}}}}}}}}}}},,,,((((((((--((((,,<< CS
RF02541 2574 cGGCUGUUCGCCgaUUAAAGcGguACGuGAGCuGGGUUcAGaaCGUCGUGAGACAGuuCGGUCCcUAUCcgccGcGgGcGuaGGaggccUGAggGgaucc 2673
:GGCUGUUCGCC::UUAAAG:GGUACG+GAGCUGGGUU+AGAACGUCGUGAGACAGUUCGGUCCCUAUC:GCCG:GGGCG +GGAG::CUGAGGGG +C:
rrlH 2548 UGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCU 2647
**************************************************************************************************** PP
NC
<<<<<_______________>>>>>>><<<<<<---<<<----<<<<<<<<<<<____>>>>>>-->>>>>---->>>->>>>>>,,<<<----<<<<<_ CS
RF02541 2674 gccccUAGUACGAGAGGACCggggcgggCggaCCucugGUGuacCgGuuGucgcGCcAgcggCauugCcGgGUAGCcauGuccGcaaggGAUAAcCGCUG 2773
:C:CCUAGUACGAGAGGACCGG:G::G:CG:A:C+CU:GUGU C:GGUUGUC::GCCA::GGCA UGCC:GGUAGC:A+:U:CG:AA :GAUAA::GCUG
rrlH 2648 GCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUG 2747
**************************************************************************************************** PP
vv vv NC
__________>>>>>---->>>,))))------)))))))),,<<<...._____>>>.,(--((((<<<<<_______>>>>>,,,,<<<<<<<<<<<- CS
RF02541 2774 AAaGCAUCUAAGCGgGAAgCccacCccAAGAuaAggccuCCcucgg....uaaauccg.uuaAGgccccuggaAGAcuAccaggUuGAuaGgccggcgGU 2868
AAAGCAUCUAAGC::GAA+C: CCCC AGAU AG::CUCCCU::: U A +::: U AAGG C:U:GAAGAC AC:A:GUUGAUAGGCCGG GU
rrlH 2748 AAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACuccuUGAGAGUCcUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGU 2847
**********************************************988656677999789*************************************** PP
vv vv NC
-<--<<<<<____>>>>>>--->>>->>>>>->>>,,,))))-),,,}}}}}}}}:: CS
RF02541 2869 GcAAgcgcgGuAAcgcgcguAGCcgAccgguACuaAUaggcCgauaggcuugaccuu 2925
G:AA:CGC:G+ A:GCG:: AGC ACCGGUACUAAU CCG AGGCUU:ACCUU
rrlH 2848 GUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU 2904
********************************************************* PP
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