Alignments: NC
::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{----{{{-{{{,,<<<--<<<<<-....<<<<<<<____>>>>>>>...->>- CS
RF00177 1 uuuauggAGaGuuUGAUCcUggCuCAGggcGaaCGCuGGCGGcgcGcuUaAcaCAuGCAAGuCGagcccca....cggggccuuaaggccccg...aggg 93
++++UG+AGAGUUUGAUC UGGCUCAG:::GAACGCUGGCGGC::GC+UAACACAUGCAAGUCGA:C:::A ::::::: U++::::::: +::G
rrsD 1 AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAacagGAAACAGCUUGCUGUUUCgcuGACG 100
**********************************************************************99999******************9999*** PP
v v v v v NC
>>>>>>,,,,,,[[[,,,,,,((((((((--((---(((((((,<<<<----<<<<<<<____>>>>>>>----->>>>,,,,,<<<<<<<<<<____>> CS
RF00177 94 ggcGgCGaAcGGGuGAGUAAcgCGcgggcAAccUacCcccgggugcgGgAUAccccccgGAAAcggggggUAAUACcgcAUaaugccccggcccguaugg 193
:G:GGCG ACGGGUGAGUAA+::::GGG A:CU+CC :::GG+G GGGAUA C::C:GGAAAC:G::G UAAUACC CAUAA ::CG+A+G:
rrsD 101 AGUGGCGGACGGGUGAGUAAUGUCUGGGA-AACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAAC-------GUCGCAAGA 192
*****************************.9*****************************************************.......9******** PP
v NC
>>>>>>>>,,,,<<<..........._____>>>,)))))))--))))))))))<<<--<-<<<--<<<<<<<<_______>>>>>>>>>>>----->>> CS
RF00177 194 gccggggcuAAAGgc...........auuuagcCGcccgggGAugggcccgCGccccAUcAGcuAGuuGGuggGGUAAuGGCccaCCaaggCgAuGAggg 282
: AAA::: ++:::GCC::: GAUG: CCC:::::::AU:AGCU GUUGGUG:GGUAA GGC:CACCAAGGCGA+GA:::
rrsD 193 C-------CAAAGAGggggacccucgGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUUGUUGGUGGGGUAACGGCUCACCAAGGCGACGAUCC 285
9.......******99*****9988666666********************************************************************* PP
NC
>,,<<<<<<<<____>>>>--->>>>]]],<<<<<<__________>>>>>>,<<<<____>>>>,,,}}}}}}-},,,,,<-<<<---<<<<<____>> CS
RF00177 283 gUAGccGgccuGAGAgggcGauCggCCaCAcuGGgaCUGAGAcACGgcCCagACuCCUACGGGaGGCAGCaGugggGAAUauUgcgCAAugGgcGaAAgc 382
:UAGC:G::CUGAGAGG::GA C:GCCACACUGG:ACUGAGACACGG:CCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGC:CAAUGGGCG AAGC
rrsD 286 CUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGC 385
**************************************************************************************************** PP
v NC
>>>->>>>,}}-}}}}}},,<<<<------<<<<____>>>>----->>>>,,,<<<<<<<---<-----<<<___........______>>>----->- CS
RF00177 383 CugAcgcaGCgAcgCCGCGUGgggGAuGAAggccUUcGggccGUAAAcccCUuUcccggGgGAagAaaaaccgaua........uuuuaucgguuuGAcg 474
CUGA:GCAGC:A:GCCGCGUG:::GA+GAA::CCUUCGGG::GUAAA:::CUUUC ::GGGGA GAA ::G++A UU+ C::+UUGACG
rrsD 386 CUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAG-GGAGUAAaguuaauaCCUUUGCUCAUUGACG 484
*****************************************************************998.7888888899988754445558999****** PP
v v NC
--->>>>>>--->,,<<<<<------<<<<<-----<<____>>------->>>>>>>>>>,}}}}}}}}}},,,,,,,,,,{{{-----{,[[[[-[-[ CS
RF00177 475 gUAcCccgggAagAAGcccCGGCUAAcuccGUGCCAGCAGCCGCGGUAAuACggagGgggCaaGCGuugccCGGAaUuAuUGGGcGUAAAGgGcgcGcAg 574
UACCC:: GAAGAAGC:CCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGG:GCAAGCGUU:::CGGAAUUA+UGGGCGUAAAG GC:CG AG
rrsD 485 UUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAG 584
**************************************************************************************************** PP
v v v NC
[[,<<<<<<<-<<<<<<<<<<<----<<<<<<<_____>>>>>>>-->>>>>>>>>-->>>>>>>>>,,,(((((((((--(((((((<<--<<<<<<<< CS
RF00177 575 GcGGcccggcAaGucgggcgcgAAAucccgcgGCUcAACcgcgggaucgcgcccgaaACugccgggCUuGaGuccggccGAgGggggcggAAcucccggu 674
GCGG:::G::AAGUC:G::G::AAAU CC: GGCUCAACC :GG A+::C::C:GA+ACU::C:::CUUGAGU ::G::GAGGGGGG::GAA:UCC:GGU
rrsD 585 GCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGU 684
**************************************************************************************************** PP
v v v v NC
---<<<______>>>------>>>>>>>>-->>,,,,<--<<____>>>)))))))-))))))-))),,,]]]]--]]]],,,,<<<<<<---<<---<< CS
RF00177 675 GUAGcgGUGAAAugCGUAGAuaucgggagGAacACCacugGCGAAGGCggccccCuGggccgguaCuGACgCugAggcgCGAAAGCguGGGgAgCaAAcg 774
GUAGCGGUGAAAUGCGUAGA AUC:GGA:GAA:ACC+ UGGCGAAGGC :CCCCCUG::C:: ACUGACGCU AGG:GCGAAAGCGUGGGGAGCAAAC:
rrsD 685 GUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACA 784
**************************************************************************************************** PP
NC
<<_________>>>>--->>>>>>>>,,,,,,,,,,((((((,,<<<<<<<<<<<<_____>>>>>>>>>>>>,,,<<____>>,,,,,))))))}}}}, CS
RF00177 775 GGAUUAGAUACCCcgGUAGuCCacGCcgUAAACGAUGggcgCUAGgcgccggggggauuaaccccccggcgcCgaAGcuAAcgCauUAAGcgccCCgCCU 874
GGAUUAGAUACCC:GGUAGUCCACGCCGUAAACGAUG::::CU GG::: : G:: UU A::C : :::CCG AGCUAACGC+UUAAG::::CCGCCU
rrsD 785 GGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCU 884
**************************************************************************************************** PP
NC
<<<------<<<<____>>>>---->>>,,,,,,,,{{{{{-{{{{{{{-{{,,{{{{{{{{{{{{{{{{{,,,,<<<<________>>>>,,,,,,,,{ CS
RF00177 875 GgGGAgUACggcCGCAAGgcugAAACuCAAAGGAAUuGaCgGgGgCCCGCaCAAGCGguGgagcauGuGGuUUAAuuCGAuGcaAcgCGaaGAACCUUAC 974
GGGGAGUACG:CCGCAAGG:U+AAACUCAAA GAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUAC
rrsD 885 GGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUAC 984
**************************************************************************************************** PP
v v NC
{{{{{{,,,,,((((((((,,<<<<<<<____>>>>>>>,<<<<____>>>>)))))-))),[[-[[[[--[[[[[[[[[,,,((((((<<<____>>>, CS
RF00177 975 CcgggcUUGAcgugccgggaaccccccgGAaAcgggggguccccuuaaggggcccggacacAGGUGcugCAuGgcuGuCGUCAGCuCGuguCGUGAGauG 1074
C:GG:CUUGAC:U:C::GGAA ::::C:GA A:G:::: +: CCUU +GG :CC::GA:A:AGGUGCUGCAUGGCUGUCGUCAGCUCGUGU:GUGA:AUG
rrsD 985 CUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUG 1084
**************************************************************************************************** PP
NC
,<<<<______>>>>,,)))))),,,,,((((,<<<<<<<---<<--<<<______>>>>>---->>>>>>>,,<<<<<<<<_____>>>>>>>>,,,,, CS
RF00177 1075 UcgGGUUAAGUCCcgcAaCGaGCGCAACCCccgccccuagUUgCcAucgguuuauuccggGcACUcuaggggGACcgCCggcGauAAgccGGagGAAGGu 1174
U:GGGUUAAGUCCC:CAACGAGCGCAACCC::+:CC:U:GUUGCCA+CGG U ++CCGGG+ACUC:A:GG:GAC:GCC:G:GAUAA:C:GGA:GAAGGU
rrsD 1085 UUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGG-UCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGU 1183
**************************************************.88899******************************************** PP
NC
)))),,,,]]]]-]]]---]]]]]]]],,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<<-----<<<--<<---<<<____>>>--->>---->> CS
RF00177 1175 ggGGAuGACGuCAaguCauCauggCCCUUAugcccgGGGCuaCACaCgugcuaCAAUGgccggcACAaaggGuaGCaAagccGcGAggcggAGCuAAUCc 1274
::GGAUGACGUCAAGUCAUCAUGGCCCUUA+G:CC:GGGCUACACACGUGCUACAAUG:C::::ACAAAG:G+AGC+A ::CGCGAG:: +AGC A C:
rrsD 1184 GGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCU 1283
**************************************************************************************************** PP
NC
>----->>>>>>>,,,,,,<---<<<<<<<<________>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<_______>>>>>>>>,,,,,,}}--- CS
RF00177 1275 cauAAAgccggcCucAGUUCGGAcuGgaGgCUGcAAcUCGcCucCagGAAGuuGGAauCGCUAGUAaucGcggcUCAGcAugccgCgguGAAUACGuUCc 1374
CAUAAA::::G:C +AGU CGGA:UGGAG:CUGCAACUCG:CUCCA:GAAGU+GGAAUCGCUAGUAAUCG:GG:UCAG AU:CC:CGGUGAAUACGUUCC
rrsD 1284 CAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCC 1383
**************************************************************************************************** PP
NC
}}}}}}}}}}-}},,<-<<-<<---<<<<<<<<--<<<<<<<<<<<<----<<<<<<-<<<<--<<____>>->>>>>>>>>>--->>>>>>>>>>>>-- CS
RF00177 1375 CGGGcCuuGuACaCACCGcCCGUCAcgcCacggaAgccggccccgcCcGAAGccgccgcgccAAccuuaaggaggcgggcggCuAaGgcggggccggcgA 1474
CGGGCCUUGUACACACCGCCCGUCAC:CCA::G+A::::::::C::: GAAG:::::+::::AACCUU GGA:::::::::C A :::G::::::::GA
rrsD 1384 CGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGA 1483
**************************************************************************************************** PP
NC
>>>>>>>>---->>-->>-->,<<<<<<<<<<____>>>>>>>>>>::::::::::::: CS
RF00177 1475 ccggGgcgAAGUCGUAaCAAGGuagCcguaccGGAAggugcgGcugGAUcAccUcCUUu 1533
C::GGG:GAAGUCGUAACAAGGUA:CCGUA::GGAA::UGCGG:UGGAUCACCUCCUU
rrsD 1484 CUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA 1542
*********************************************************** PP
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