Alignments: NC
::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{----{{{-{{{,,<<<--<<<<<-....<<<<<<<____>>>>>>>...->>- CS
RF00177 1 uuuauggAGaGuuUGAUCcUggCuCAGggcGaaCGCuGGCGGcgcGcuUaAcaCAuGCAAGuCGagcccca....cggggccuuaaggccccg...aggg 93
++++UG+AGAGUUUGAUC UGGCUCAG:::GAACGCUGGCGGC::GC+UAACACAUGCAAGUCGA:C:::A :::G::: U++:::C::: +::G
rrsG 1 AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAacagGAAGCAGCUUGCUGCUUCgcuGACG 100
**********************************************************************999********************9999*** PP
v v v v v NC
>>>>>>,,,,,,[[[,,,,,,((((((((--((---(((((((,<<<<----<<<<<<<____>>>>>>>----->>>>,,,,,<<<<<<<<<<____>> CS
RF00177 94 ggcGgCGaAcGGGuGAGUAAcgCGcgggcAAccUacCcccgggugcgGgAUAccccccgGAAAcggggggUAAUACcgcAUaaugccccggcccguaugg 193
:G:GGCG ACGGGUGAGUAA+::::GGG A CU+CC :::GG+G GGGAUA C::C:GGAAAC:G::G UAAUACC CAUAAU ::CG+A+G:
rrsG 101 AGUGGCGGACGGGUGAGUAAUGUCUGGGA-AGCUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAAU-------GUCGCAAGA 192
****************************9.9*****************************************************.......9******** PP
v NC
>>>>>>>>,,,,<<<..........._____>>>,)))))))--))))))))))<<<--<-<<<--<<<<<<<<_______>>>>>>>>>>>----->>> CS
RF00177 194 gccggggcuAAAGgc...........auuuagcCGcccgggGAugggcccgCGccccAUcAGcuAGuuGGuggGGUAAuGGCccaCCaaggCgAuGAggg 282
: AAA::: ++:::GCC::: GAUG CCC:::::::AU:AGCU GUUGGUG:GGUAA GGC:CACCAAGGCGA+GA:::
rrsG 193 C-------CAAAGAGggggaccuucgGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUUGUUGGUGGGGUAACGGCUCACCAAGGCGACGAUCC 285
9.......******99****99877655556********************************************************************* PP
NC
>,,<<<<<<<<____>>>>--->>>>]]],<<<<<<__________>>>>>>,<<<<____>>>>,,,}}}}}}-},,,,,<-<<<---<<<<<____>> CS
RF00177 283 gUAGccGgccuGAGAgggcGauCggCCaCAcuGGgaCUGAGAcACGgcCCagACuCCUACGGGaGGCAGCaGugggGAAUauUgcgCAAugGgcGaAAgc 382
:UAGC:G::CUGAGAGG::GA C:GCCACACUGG:ACUGAGACACGG:CCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGC:CAAUGGGCG AAGC
rrsG 286 CUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGC 385
**************************************************************************************************** PP
v NC
>>>->>>>,}}-}}}}}},,<<<<------<<<<____>>>>----->>>>,,,<<<<<<<---<-----<<<___........______>>>----->- CS
RF00177 383 CugAcgcaGCgAcgCCGCGUGgggGAuGAAggccUUcGggccGUAAAcccCUuUcccggGgGAagAaaaaccgaua........uuuuaucgguuuGAcg 474
CUGA:GCAGC:A:GCCGCGUG:::GA+GAA::CCUUCGGG::GUAAA:::CUUUC ::GGGGA GAA ::G++A UU+ C::+UUGACG
rrsG 386 CUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAG-GGAGUAAaguuaauaCCUUUGCUCAUUGACG 484
*****************************************************************998.7888888899988754445558999****** PP
v v NC
--->>>>>>--->,,<<<<<------<<<<<-----<<____>>------->>>>>>>>>>,}}}}}}}}}},,,,,,,,,,{{{-----{,[[[[-[-[ CS
RF00177 475 gUAcCccgggAagAAGcccCGGCUAAcuccGUGCCAGCAGCCGCGGUAAuACggagGgggCaaGCGuugccCGGAaUuAuUGGGcGUAAAGgGcgcGcAg 574
UACCC:: GAAGAAGC:CCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGG:GCAAGCGUU:::CGGAAUUA+UGGGCGUAAAG GC:CG AG
rrsG 485 UUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAG 584
**************************************************************************************************** PP
v v v v v NC
[[,.<<<<<<<-<<<<<<<<<<<----<<<<<<<_____>>>>>>>-->>>>>>>>>-->>>>>>>>>,,,(((((((((--(((((((<<--<<<<<<< CS
RF00177 575 GcG.GcccggcAaGucgggcgcgAAAucccgcgGCUcAACcgcgggaucgcgcccgaaACugccgggCUuGaGuccggccGAgGggggcggAAcucccgg 673
GCG G:: G::AAGUC:G::G::AAAU CC: GGCUCAACC :GG A+::C::C:GA+ACU::C ::CUUGAGU ::G::GAGGGGGG::GAA:UCC:GG
rrsG 585 GCGgGUUGGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGG 684
**725666799***************************************************************************************** PP
v v v v NC
<---<<<______>>>------>>>>>>>>-->>,,,,<--<<____>>>)))))))-))))))-))),,,]]]]--]]]],,,,<<<<<<---<<---< CS
RF00177 674 uGUAGcgGUGAAAugCGUAGAuaucgggagGAacACCacugGCGAAGGCggccccCuGggccgguaCuGACgCugAggcgCGAAAGCguGGGgAgCaAAc 773
UGUAGCGGUGAAAUGCGUAGA AUC:GGA:GAA:ACC+ UGGCGAAGGC :CCCCCUG::C:: ACUGACGCU AGG:GCGAAAGCGUGGGGAGCAAAC
rrsG 685 UGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAAC 784
**************************************************************************************************** PP
NC
<<<_________>>>>--->>>>>>>>,,,,,,,,,,((((((,,<<<<<<<<<<<<_____>>>>>>>>>>>>,,,<<____>>,,,,,))))))}}}} CS
RF00177 774 gGGAUUAGAUACCCcgGUAGuCCacGCcgUAAACGAUGggcgCUAGgcgccggggggauuaaccccccggcgcCgaAGcuAAcgCauUAAGcgccCCgCC 873
:GGAUUAGAUACCC:GGUAGUCCACGCCGUAAACGAUG::::CU GG::: : G:: UU A::C : :::CCG AGCUAACGC+UUAAG::::CCGCC
rrsG 785 AGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCC 884
**************************************************************************************************** PP
NC
,<<<------<<<<____>>>>---->>>,,,,,,,,{{{{{-{{{{{{{-{{,,{{{{{{{{{{{{{{{{{,,,,<<<<________>>>>,,,,,,,, CS
RF00177 874 UGgGGAgUACggcCGCAAGgcugAAACuCAAAGGAAUuGaCgGgGgCCCGCaCAAGCGguGgagcauGuGGuUUAAuuCGAuGcaAcgCGaaGAACCUUA 973
UGGGGAGUACG:CCGCAAGG:U+AAACUCAAA GAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA
rrsG 885 UGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA 984
**************************************************************************************************** PP
v v NC
{{{{{{{,,,,,((((((((,,<<<<<<<____>>>>>>>,<<<<____>>>>)))))-))),[[-[[[[--[[[[[[[[[,,,((((((<<<____>>> CS
RF00177 974 CCcgggcUUGAcgugccgggaaccccccgGAaAcgggggguccccuuaaggggcccggacacAGGUGcugCAuGgcuGuCGUCAGCuCGuguCGUGAGau 1073
CC:GG:CUUGAC:U:C::GGAA ::::C:GA A:G:::: +: CCUU +GG :CC::GA:A:AGGUGCUGCAUGGCUGUCGUCAGCUCGUGU:GUGA:AU
rrsG 985 CCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAU 1084
**************************************************************************************************** PP
NC
,,<<<<______>>>>,,)))))),,,,,((((,<<<<<<<---<<--<<<______>>>>>---->>>>>>>,,<<<<<<<<_____>>>>>>>>,,,, CS
RF00177 1074 GUcgGGUUAAGUCCcgcAaCGaGCGCAACCCccgccccuagUUgCcAucgguuuauuccggGcACUcuaggggGACcgCCggcGauAAgccGGagGAAGG 1173
GU:GGGUUAAGUCCC:CAACGAGCGCAACCC::+:CC:U:GUUGCCA+CGG U ++CCGGG+ACUC:A:GG:GAC:GCC:G:GAUAA:C:GGA:GAAGG
rrsG 1085 GUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGG-UCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGG 1183
***************************************************.88899******************************************* PP
NC
,)))),,,,]]]]-]]]---]]]]]]]],,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<<-----<<<--<<---<<<____>>>--->>----> CS
RF00177 1174 uggGGAuGACGuCAaguCauCauggCCCUUAugcccgGGGCuaCACaCgugcuaCAAUGgccggcACAaaggGuaGCaAagccGcGAggcggAGCuAAUC 1273
U::GGAUGACGUCAAGUCAUCAUGGCCCUUA+G:CC:GGGCUACACACGUGCUACAAUG:C::::ACAAAG:G+AGC+A ::CGCGAG:: +AGC A C
rrsG 1184 UGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACC 1283
**************************************************************************************************** PP
NC
>>----->>>>>>>,,,,,,<---<<<<<<<<________>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<_______>>>>>>>>,,,,,,}}-- CS
RF00177 1274 ccauAAAgccggcCucAGUUCGGAcuGgaGgCUGcAAcUCGcCucCagGAAGuuGGAauCGCUAGUAaucGcggcUCAGcAugccgCgguGAAUACGuUC 1373
:CAUAAA::::G:C +AGU CGGA:UGGAG:CUGCAACUCG:CUCCA:GAAGU+GGAAUCGCUAGUAAUCG:GG:UCAG AU:CC:CGGUGAAUACGUUC
rrsG 1284 UCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUC 1383
**************************************************************************************************** PP
NC
-}}}}}}}}}}-}},,<-<<-<<---<<<<<<<<--<<<<<<<<<<<<----<<<<<<-<<<<--<<____>>->>>>>>>>>>--->>>>>>>>>>>>- CS
RF00177 1374 cCGGGcCuuGuACaCACCGcCCGUCAcgcCacggaAgccggccccgcCcGAAGccgccgcgccAAccuuaaggaggcgggcggCuAaGgcggggccggcg 1473
CCGGGCCUUGUACACACCGCCCGUCAC:CCA::G+A::::::::C::: GAAG:::::+::::AACCUU GGA:::::::::C A :::G::::::::G
rrsG 1384 CCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUG 1483
**************************************************************************************************** PP
NC
->>>>>>>>---->>-->>-->,<<<<<<<<<<____>>>>>>>>>>::::::::::::: CS
RF00177 1474 AccggGgcgAAGUCGUAaCAAGGuagCcguaccGGAAggugcgGcugGAUcAccUcCUUu 1533
AC::GGG:GAAGUCGUAACAAGGUA:CCGUA::GGAA::UGCGG:UGGAUCACCUCCUU
rrsG 1484 ACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA 1543
************************************************************ PP
|
