serT

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

63.9

E-value:

6.9e-15

From sequence:

1

To sequence:

85

Alignments:

                                                                                                     NC
             (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..............,,<<<<<_______>>>>>))))))): CS
  RF00005  1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag..............gcgcgGGUUCgAaUCCcgcuaucucCa 71
             GGA:: :U+GC::AG GGU  A::GC+:CGG:CUU AAA:CCG:                 C::G:GUUCGAAUC:C::: ::UCC+
     serT  1 GGAAGUGUGGCCGAGCGGUugAAGGCACCGGUCUUGAAAACCGGC-gacccgaaaggguu-CCAGAGUUCGAAUCUCUGCGCUUCCG 85
             ****************9998*************************.8***********74.************************** PP

RNAfold
>serT
GAAGUGUGGCCGAGCGGUUGAAGGCACCGGUCUUGAAAACCGGCGACCCG
AAAGGGUUCCAGAGUUCGAAUCUCUGCGCUUCCG
((((((..(((...........))).(((((.......))))).(((((....))))).(((((.......))))))))))).. (-29.70)

Length sequence

: 84

Length match:

83