serU

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

54.2

E-value:

3.7e-12

From sequence:

1

To sequence:

85

Alignments:

                                                                                                      ??  NC
             ~~~~~(((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,...............,.,<<<<<_______>>>>>))))))): CS
  RF00005  1 <[2]*agauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag...............g.cgcgGGUUCgAaUCCcgcuaucucCa 71
                  AGA:AU+:C::AG GG   A::G:+:CGG:CU  AAA:CCG:A                  CG:GGGUUC+AAUCCC:CU:UCUCC+
     serU  1 <[0]*AGAGAUGCCGGAGCGGCugAACGGACCGGUCUCGAAAACCGGA-guaggggcaacucua-cCGGGGGUUCAAAUCCCCCUCUCUCCG 85
             .....**************7777*************************.8*************5.5************************** PP

RNAfold
>serU
GAGAUGCCGGAGCGGCUGAACGGACCGGUCUCGAAAACCGGAGUAGGGGC
AACUCUACCGGGGGUUCAAAUCCCCCUCUCUCCG
(((..(((((..((......))..))))))))......((((((((((....)))))).(((((.......)))))....)))) (-32.60)

Length sequence

: 84

Length match:

83