serX

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

59.9

E-value:

8.9e-14

From sequence:

1

To sequence:

85

Alignments:

                                                                                                     NC
             (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,.............,.,<<<<<_______>>>>>))))))): CS
  RF00005  1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag.............g.cgcgGGUUCgAaUCCcgcuaucucCa 71
             GG:GA::U+ C::AGUGG   A::G G::: :CU+ AAA: :::+                CG:GGGUUCGAAUCCC:C::UC:CC+
     serX  1 GGUGAGGUGUCCGAGUGGCugAAGGAGCACGCCUGGAAAGUGUGU-auacggcaacgua-uCGGGGGUUCGAAUCCCCCCCUCACCG 85
             ****************7777*************************.8***********6.4************************** PP

RNAfold

>serX
GUGAGGUGUCCGAGUGGCUGAAGGAGCACGCCUGGAAAGUGUGUAUACGG
CAACGUAUCGGGGGUUCGAAUCCCCCCCUCACCG
((((((..((((.((((((.....))).))).))))........(((((....))))).(((((.......))))))))))).. (-32.50)

Length sequence

: 84

Length match:

83