sraB,

cmscan-Rfam

Family :

SraB

Id:

RF00077

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. This ncRNA was
found to be expressed only in stationary phase [1]. The function of this RNA is
unknown.

Score:

210.6

E-value:

7.1e-47

From sequence:

1

To sequence:

169

Alignments:

                                                                                                                     NC
              :::::::::::::::::<<<<_______________>>>>,,,,,,,,,,,,,,,,,,,,<<<<<<---<<<-<<<<<<_____>>>>>>-->>>>>>>>>, CS
  RF00077   1 uaGGCAUAUUUUUUUCCcuCaGAUAUAGCGUAuUGAuGagAGCCAuuUUAAACUAUGCgCuuCGuuuUgCaggcuggucaUuuUgaccaguacuGaaCGaaA 102
              UAGGCAUAUUUUUUUCC:UCAGAUAUAGCGUAUUGAUGA:AGCCAUUUUAAACUAUGCGCUUCGUUUUGCAGG:UG:U:+UU U:A:CA:+ACUGAACGAAA
    sraB,   1 UAGGCAUAUUUUUUUCCAUCAGAUAUAGCGUAUUGAUGAUAGCCAUUUUAAACUAUGCGCUUCGUUUUGCAGGUUGAUGUUUGUUAUCAGCACUGAACGAAA 102
              ****************************************************************************************************** PP

                                                                                  NC
              ,,,,,,,,<<<<--<<<<_____>>>>-->>>>,,,,<<<<<<<<-<<___>>->>>>>>>>::::: CS
  RF00077 103 AUAAggCuguaaCCCGCaAUGUGuGCGAAuuauUGGCaaaaGGCaACCgCAGGCuGCCuuuuUcUuu 169
              AUAA+GC+GUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACC+CAGGCUGCCUUUUUCUUU
    sraB, 103 AUAAAGCAGUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACCACAGGCUGCCUUUUUCUUU 169
              ******************************************************************* PP

RNAfold
>sraB,
aggcauauuuuuuuccaucagauauagcguauugaugauagccauuuuaa
acuaugcgcuucguuuugcagguugauguuuguuaucagcacugaacgaa
aauaaagcaguaacccgcaaugugugcgaauuauuggcaaaaggcaacca
caggcugccuuuuucuuu
..((...........((((((.(((...)))))))))...(((((........))).))((((((...((((((((((.....))))))).))))))))).......((((((..((((.....))))..))))))))((((((((.((...)).))))))))..... (-41.80)

Length sequence

: 168

Length match:

167