sraC,

cmscan-Rfam

Family :

SraC_RyeA

Id:

RF00101

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screens [1-2]. The function of
this RNA is unknown. This RNA overlaps RFAM:RF00111 on the opposite strand suggesting that the
two may act in a concerted manner.

Score:

174.2

E-value:

8.3e-43

From sequence:

35

To sequence:

179

Alignments:

                                v           v                                                                        NC
              :::::::::::<<<<<<<<<<_______>>>>>>>>>>,,,,,,,<<<<<<<<______>>>>>>>>,,<<_________>>,,,,,,,,,<<<______>> CS
  RF00101   1 AauUAAAAAaAGaCCGaauacGAUUCCUguauuCGGuCuAGGGAAauGGCuCuUGGGAgaGaGCCguGCGCUAAAAGUUGGCAUUAAuGuAGGCUuAuUcGC 102
              A++UAAAAA+AGACCGAA ACGAUUCCUGU UUCGGUC+AGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUG+AGGCUUA U+GC
    sraC,  35 AGAUAAAAAGAGACCGAACACGAUUCCUGUAUUCGGUCCAGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUGCAGGCUUAGUUGC 136
              ****************************************************************************************************** PP

                                                          NC
              >:::::::::::::::::::::::::::::::::::::::::: CS
  RF00101 103 CuuaCucuUUAAGaaUAGuuGAguACgucaguUUuuCcAauUU 145
              CUU+C CUUUAAGAAUAG+UGA +ACG+CAG UUUUCCA+UUU
    sraC, 137 CUUGCCCUUUAAGAAUAGAUGACGACGCCAGGUUUUCCAGUUU 179
              ******************************************* PP

RNAfold
>sraC,
gauaaaaagagaccgaacacgauuccuguauucgguccagggaaauggcu
cuugggagagagccgugcgcuaaaaguuggcauuaaugcaggcuuaguug
ccuugcccuuuaagaauagaugacgacgccagguuuuccaguuu
..........(((((((.(((.....))).))))))).((.(..(((((((((....))))))))).).))((((.(((((......((((((......))).))).((........))........))))).))))....... (-41.10)

Length sequence

: 144

Length match:

143