sraE,

cmscan-Rfam

Family :

OmrA-B

Id:

RF00079

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

95.5

E-value:

2e-20

From sequence:

1

To sequence:

88

Alignments:

                                 v                             v                                       NC
             :::::::::::::::<<<<<<..------<<<<<<_____>>>>>>---->------>>>>><<<<<<<<____>>>>>>>>::::::: CS
  RF00079  1 CCCAGAGGUAUUGAUuGGUGa..uuaauaggcacgcucuucgugccuAauuuaaUUgCACCaaCCUgCGCaGAUGCGcAGGuUUUUUUU 87
             CCCAGAGGUAUUGAUUGGUGA  UUA+U+GG:ACGCUCUUCGU:CC+  U  ++UUGCACCAACCUGCGC+GAUGCGCAGGUUUUUUUU
    sraE,  1 CCCAGAGGUAUUGAUUGGUGAgaUUAUUCGGUACGCUCUUCGUACCCUGU-CUCUUGCACCAACCUGCGCGGAUGCGCAGGUUUUUUUU 88
             ********************6669***********************987.************************************** PP

RNAfold
>sraE,
ccagagguauugauuggugagauuauucgguacgcucuucguacccuguc
ucuugcaccaaccugcgcggaugcgcagguuuuuuuu
..............(((((((((.....((((((.....))))))..)))))....))))((((((((....))))))))....... (-29.50)

Length sequence

: 87

Length match:

86