sraG,

cmscan-Rfam

Family :

SraG

Id:

RF00082

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. The function of
this RNA is unknown. Evidence was found for specific cleavage of this RNA [1].

Score:

164.2

E-value:

1.3e-32

From sequence:

3

To sequence:

174

Alignments:

                                                                                                                     NC
              <<<<-<<--<<<----<<<<-<<<<<<<______________________..._________>>>>>>>--->>>>------>>>-->>>>>>,,,,,<<__ CS
  RF00082   1 CUuCAcgCugCAUCCUCGCGACUAAuGACAAccCUuAuccuuCuuuAaGu...UAaAGuCUCUCaUUAGCCGCGCGAACCUCUGcAacgGaAGAuCcUucuu 99 
              CUUC :GC GCAUCCUCGCGACUAAUGACAACCCU+A+CC +CU UA+GU   UAAAG+CUCUCAUUAGCCGCGCGAACCUCUGCAAC:GAAGAUC+UUC  
    sraG,   3 CUUC-UGC-GCAUCCUCGCGACUAAUGACAACCCUAACCCAGCUCUAUGUgggUAAAGCCUCUCAUUAGCCGCGCGAACCUCUGCAACGGAAGAUCAUUC-- 100
              ****.***.*******************************************************************************************.. PP

                                                                                              NC
              _____________________________>>,,,,,,,,,,,,,,,.,,,,,,,,,,<<<<<<_____>>>>>>::::: CS
  RF00082 100 auAaAucAacAauAaCAuUauuuUacuGUgaUaUAUgAUgaCuUCu.CuagAAAAAAGGGGCcAuauagGCCCCuUUUc 177
                A+A CAACAAUA CAUUA UUU C+GUGA AU UG UG C UC  CU GAAAAAAGGGGCCA + AGGCCCC+UUU+
    sraG, 101 --AUAGCAACAAUA-CAUUAGUUUCCAGUGA-AU-UGCUGCCGUCAgCUUGAAAAAAGGGGCCACUCAGGCCCCCUUUU 174
              ..************.****************.66.799***************************************** PP

RNAfold
>sraG,
ucuucugcgcauccucgcgacuaaugacaacccuaacccagcucuaugug
gguaaagccucucauuagccgcgcgaaccucugcaacggaagaucauuca
uagcaacaauacauuaguuuccagugaauugcugccgucagcuugaaaaa
aggggccacucaggcccccuuuu
(((((((.(((...(((((.(((((((........(((((........)))))........)))))))...))))).....)))..))))))).........(((.((((.((((.......)))).)))).)))................((((((.....))))))..... (-50.50)

Length sequence

: 173

Length match:

171