sraH,

cmscan-Rfam

Family :

ArcZ

Id:

RF00081

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. SraH expression is
highly abundant in stationary phase, but low levels could be detected in exponentially growing cells
as well [1]. The function of this RNA is unknown.

Score:

120.3

E-value:

8e-30

From sequence:

1

To sequence:

108

Alignments:

                                                                                                                     NC
              ::::::::::::::.::::<<<<<<<<_____________________.___>>>>>>>>------------<<<----<<<<_______>>>>>>>::::: CS
  RF00081   1 GUGCggccuaAaaa.cagugcuGcGCCcuuuuAaAuCAUCAuAAuaAu.uACGGCgCagcCAcgAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCCGGU 100
              GUGCGGCCU+AAAA CAGUGCUG:GCCCUU UAA UCAUCAUAAUAAU UACGGC:CAGCCA+GAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCCGGU
    sraH,   1 GUGCGGCCUGAAAAaCAGUGCUGUGCCCUUGUAACUCAUCAUAAUAAUuUACGGCGCAGCCAAGAUUUCCCUGGUGUUGGCGCAGUAUUCGCGCACCCCGGU 102
              *************55*********************************999*************************************************** PP

                     NC
              :::::: CS
  RF00081 101 CUAgcC 106
              CUAGCC
    sraH, 103 CUAGCC 108
              ****** PP

RNAfold
>sraH,
ugcggccugaaaaacagugcugugcccuuguaacucaucauaauaauuua
cggcgcagccaagauuucccugguguuggcgcaguauucgcgcaccccgg
ucuagcc
...((((((.....))).((((((((...((((..............))))))))))))..........((((.((..((((.......)))))).))))....))) (-27.50)

Length sequence

: 107

Length match:

106