sraL,

cmscan-Rfam

Family :

sraL

Id:

RF01408

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

144.0

E-value:

1.1e-34

From sequence:

1

To sequence:

140

Alignments:

                                                                                                                     NC
              :(((((((,,,,,<<_____>>,,,,,,,,<<<<___>>>>,,))))))),(((,<<<____>>><<<<<<______>>>>>>,,,,,,,,,,))),,,,,, CS
  RF01408   1 gucagCaCAAACCGGAACCUCCaucAaaugCuCgAuacGaGGGGuGcugauGuCGGGGGAAACCCuCccGcaaaucAgCggGaUAaaGcgAAAGaCaAagaC 102
              +UCA:CAC AACCGGAACCUCCA+CA +UGCUC:A A:GAGG GUG:UGA+GUCGGGGGAAACCCUCC:G:+ A+CA:C:GGAUA+AG+GAAAGACAAAGAC
    sraL,   1 AUCAACACCAACCGGAACCUCCACCACGUGCUCGA-AUGAGGUGUGUUGACGUCGGGGGAAACCCUCCUGUGUACCAGCGGGAUAGAGAGAAAGACAAAGAC 101
              **********************************9.8***************************************************************** PP

                                                        NC
              ,,,,,,.,<<<<<<<<<<<<<______>>>>>>>>>>>>>: CS
  RF01408 103 cGgAaa.caaaCuaaaGCGCCuuuaguGGCGCuuuaGuuuU 142
              CGGAAA CAAACUAAAGCGCC+UU GUGGCGCUUUAGUUU 
    sraL, 102 CGGAAAaCAAACUAAAGCGCCCUU-GUGGCGCUUUAGUUU- 140
              99999889**************99.99**********997. PP

RNAfold
>sraL,
ucaacaccaaccggaaccuccaccacgugcucgaaugagguguguugacg
ucgggggaaacccuccuguguaccagcgggauagagagaaagacaaagac
cggaaaacaaacuaaagcgcccuuguggcgcuuuaguuu
..........((((......((((.(((......))).))))((((....((.(((....)))((((((......))))))....))....))))....))))......((((((((((((.....)))))))))))). (-44.10)

Length sequence

: 139

Length match:

139