t44,

cmscan-Rfam

Family :

t44

Id:

RF00127

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial RNA genes of between 135 and 170 bases
in length. The t44 gene has been identified in several species of enteric bacteria but
homologs have also been identified in Pseudomonas and Coxiella species. The t44 gene is found
between the map and rpsB genes in all species in the full alignment apart from
Shigella flexneri. The function of this RNA is unknown.

Score:

83.0

E-value:

1.6e-20

From sequence:

49

To sequence:

135

Alignments:

                                                     v                                v                          NC
              ::::::::::::::::::::::<<<<<<<<----<<<<<<<<<----<<<<<____________>>>>>>>>>.>>>>>->>>>>>>>:::::::::: CS
  RF00127   1 cUuauuuuauuuaaAaaaCACACACguauCGaCACaugcgcCgGGGUGCcccuauuuuagaaaagggGUcGgc.gcauGGGauacGUGGAGGCuUAAC 97 
              CU+A UUU+U U AA AACACACACGUAUCG CACAU:: CCGGGGUGCCC:U+          :GGGUCGG  ::AUGGGAUACGUGGAGGC+UAAC
     t44,  49 CUCACUUUGUGU-AACAACACACACGUAUCGGCACAUAUUCCGGGGUGCCCUUU----------GGGGUCGGUaAUAUGGGAUACGUGGAGGCAUAAC 135
              ******888865.899************************************99..........********99************************ PP

RNAfold
>t44,
gcgacaaucucacuuuguguaacaacacacacguaucggcacauauuccg
gggugcccuuuggggucgguaauaugggauacguggaggcauaacc
.......((((....(((((....)))))((((((((..(.(((((((((....((((....))))))).)))))))))))))))))))....... (-28.80)

Length sequence

: 96

Length match:

85