| tke1, |
cmscan-Rfam |
Family : GlmY_tke1 |
Id: RF00128 |
Type: Gene; sRNA; |
Taxonomy: Eukaryota; Bacteria; | Ontology: Not found |
 |
Description: This family consists of a number of bacterial RNA genes of around 167 bases in length.
The tke1 RNA gene is present in Escherichia coli, Shigella flexneri, Yersinia pestis and Salmonella
species where it is found between the yfhK and purL genes. The function of this
RNA is unknown. |
Score: 144.4 |
E-value: 7.4e-35 |
From sequence: 2 |
To sequence: 149 |
Alignments: NC
::::<<<<<<<<------<<<<<<-<<<_____________________>>>>>>>>>------>>>>>>->>--------(((((((,,<<<<<------- CS
RF00128 1 AGUuGCUCAUUCAcCUuuuUAUGacaGccccCuauuuaGcagAauaugcgCuuCAUAaacuauCGAAUGAuGCcuAAGaauGGuGCCUauCGuCCAaCuaAC 102
AGU GCUCAUUCACC ++UUAUG:CAGC C++UU +G +A G+GCU:CAUAAA+U CGAAUGA+GC+ AA A+GGUGCCU++CG:CCAACU+ C
tke1, 2 AGUGGCUCAUUCACCGACUUAUGUCAGC---CCCUUCGG-----GACGUGCUACAUAAAAU-ACGAAUGACGCACAA-CAAGGUGCCUGCCGUCCAACUU-C 92
****************************...9999****.....9****************.9**************.9*********************.* PP
NC
<<<<<<______________>>>>>>------>>>>>,<<<_____>>>)))))))::::: CS
RF00128 103 uGaUAacauguGaauacaCuuUAuCaAaCAUCGGaCGAcACGUuGAGUgAGGCaCCGCCUa 163
UGAUA:CA G+ UA +CU:UAUCAA CAUCGG:CGA:ACGU GAGU:AGGCACCGCCU+
tke1, 93 UGAUAUCA---GCGUA-GCUAUAUCAACCAUCGGGCGAAACGUCGAGUUAGGCACCGCCUU 149
********...99999.******************************************** PP
|
RNAfold |
>tke1,
aguggcucauucaccgacuuaugucagccccuucgggacgugcuacauaa
aauacgaaugacgcacaacaaggugccugccguccaacuucugauaucag
cguagcuauaucaaccaucgggcgaaacgucgaguuaggcaccgccuu
.(((..((((((......((((((.((((((...)))....))))))))).....))))))..))).....((((((((((((((......((((((.(((...)))))))))......))))).........).))))))))..... (-42.80) |
 |
Length sequence: 148 |
Length match: 147 |
