tp8,

cmscan-Rfam

Family :

SIB_RNA

Id:

RF00113

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

This family contains multiple ncRNA from E. coli that were identified in a large scale screen
of E. coli, were they were called candidates 43,55 and 61 [1]. These RNAs have
also been identified by other groups and called QUAD RNAs.

Score:

116.6

E-value:

2.2e-26

From sequence:

1

To sequence:

116

Alignments:

                                                                                                                     NC
              ~~~~~~(--((((((,,<<<____________>>>,<<<<______..__________________________________>>>><<<<<<<________> CS
  RF00113   1 <[33]*AgUaAGGGuaAGGgaGGaUuuCuCCucCCuCUGguuguCU..UAgUAaGCuggGaAaCUuAUgAgUAAcAGuAcaAcCAGuAUGAUGAcuaguuuC 127
                    A+ AAGGGUAAGGGAGGAUUUCUCC+CCCUCUG:UUG CU  UA+UAAGCUG GAAACUUA GAGUAACA +ACAA:CAGUAUGAUGAC AG+UUC
     tp8,   1 <[ 0]*AACAAGGGUAAGGGAGGAUUUCUCCCCCCUCUGAUUGGCUguUAAUAAGCUGCGAAACUUACGAGUAACAACACAAUCAGUAUGAUGACGAGCUUC 96 
              ......************************************************************************************************ PP

                           ???     NC
              >>>>>>)))))))))):::: CS
  RF00113 128 AUCAUaaCCCUuUCCUUaUu 147
              AUCAUAACCCUUUCCUU U 
     tp8,  97 AUCAUAACCCUUUCCUUCUG 116
              ******************** PP

RNAfold
>tp8,
acaaggguaagggaggauuucuccccccucugauuggcuguuaauaagcu
gcgaaacuuacgaguaacaacacaaucaguaugaugacgagcuucaucau
aacccuuuccuucuguaaggcccccuucuucgggaggggcuuuc
..((((((.((((.(((....))).))))((((((((.(((((.((((........))))....))))).).)))))))((((((((......)))))))))))))).........((((((((.(((....))))))))))). (-49.80)

Length sequence

: 144

Length match:

115