tpe7,

cmscan-Rfam

Family :

rydB

Id:

RF00118

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of several bacterial sequences from E. coli, Shigella flexneri and Salmonella species. This
RNA gene was discovered by an RNA screen [1] between the ydiC and ydiH in
E. coli. This gene is only 67 bases in length and is composed of a
hairpin like structure. The function of this RNA is unknown.

Score:

79.2

E-value:

5.6e-20

From sequence:

3

To sequence:

63

Alignments:

                                                                            NC
             :((((,,,,,,,<<<____________>>>,<<<<-<_____>->>>>,,)))):::::::: CS
  RF00118  1 GCCCCUUcaAGAGCUAAgcCcaaugUGAGUGCCGGAGAUAAGCGCCGGgUGGGGcaaAauuu 62
             GCCCCUUCAAGAGCUAAGCC A UG GAGUGCCGGAGAUAAGCGCCGG+UGGGG+A AA+ +
    tpe7,  3 GCCCCUUCAAGAGCUAAGCC-ACUGAGAGUGCCGGAGAUAAGCGCCGGAUGGGGUAGAAACC 63
             ********************.***************************************** PP

RNAfold
>tpe7,
gccccuucaagagcuaagccacugagagugccggagauaagcgccggaug
ggguagaaaccc
(((((.......((...))((((...))))((((.(.....).))))..)))))........ (-14.90)

Length sequence

: 62

Length match:

59