tyrV

cmscan-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

60.1

E-value:

7.8e-14

From sequence:

1

To sequence:

82

Alignments:

                                                                                                  NC
             (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,...........,,<<<<<_______>>>>>))))))): CS
  RF00005  1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag...........gcgcgGGUUCgAaUCCcgcuaucucCa 71
             GG:G:::U :C::AG GG   A::G:+:C:GACU++AAAUC:G:              CG::GGUUCGAAUCC::C:::C:CCA
     tyrV  1 GGUGGGGUUCCCGAGCGGCcaAAGGGAGCAGACUGUAAAUCUGCC-gucaucgacuu-CGAAGGUUCGAAUCCUUCCCCCACCA 82
             ****************9999*************************.8********85.************************** PP

RNAfold

>tyrV
GUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCAUC
GACUUCGAAGGUUCGAAUCCUUCCCCCACCA
((((((.((((...........))))(((((.......))))).(((...)))...(((((.......))))))))))).. (-25.80)

Length sequence

: 81

Length match:

80