chr22_21

cmsearch-Rfam

Family :

P4

Id:

RF01681

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

31.2

E-value:

3.5e-05

From sequence:

211660

To sequence:

211781

Alignments:

                                           v           v                                       vvvv    vv      v  NC
                 ((((<<<<<--<<<<<<<<<<<<<<-<<<<_____>>>>>>>>>>>>>------->>>>>-->>>>><<<<--<<<<<<<<<---<<<-<--<<<< CS
  RF01681     66 GCcugCCGGGccuuGCauCCCcaGCcGGcCGAAGGGgCCGCugGGGauAAAAcUcGCaagUUCCGGcgaCaGAcCGgGGaaaAAAccccGGGagCa 161   
                 :CC::CC::GCC:::C: CCC:A::        GG   +::U:GGG :AAAA U G:::G U::GG:::::  ::GGG    AA     :GG:: :
    chr22 211660 CCCCCCCCCGCCCCCCCUCCCAAAAA------GGG---UUUUUGGGGGAAAAAUUGGGGGGUGGGGGGGGGCCGGGGGCAAAAA----ACGGGGUG 211742
                 **********************9873......244...4899****************************98855554333333....46667777 PP

                        v     vv    vvvv                  NC
                 ______>>>>-->>>>--->>>>>>>>>->>>>,,,)))) CS
  RF01681    162 UcGAAUuGcuUUCggggccuuuCCcCGgGuGuccGaagGC 201   
                 U   AU: ::U :G   CC    CCC:: ::::C +:GG:
    chr22 211743 UUUUAUUUUUUGGGC-ACCCCCCCCCCCCCCCUCUCGGGG 211781
                 776666666655533.333344466667799********* PP

RNAfold
>chr22_21
GCCCCUUUUUGGGGAGAAAAAGGGGGCAAAUAAUUCCCCAAGUUUUCCCC
CCCCCGCCCCCCCUCCCAAAAAGGGUUUUUGGGGGAAAAAUUGGGGGGUG
GGGGGGGGCCGGGGGCAAAAAACGGGGUGUUUUAUUUUUUGGGCACCCCC
CCCCCCCCCCUCUCGGGGGGGGAAAACCCCCGGGGAGUAAAAAACCCCGA
AAAUUAGCCCCCAAA
((((((((((.......))))))))))...................((((((((((((((((((((((((((...)))))))))).......))))))))))))))))..((((((......((((((.((((((((((((((.....((((((((........))))))))......)))))))))))))).)))))).......))))))... (-128.10)

Length sequence

: 215

Length match:

120