gi_545778205_gb_U000_253

cmsearch-Rfam

Family :

snoTBR5

Id:

RF00292

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00292

Description:

TBR5 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

24.4

E-value:

0.003

From sequence:

53814

To sequence:

53721

Alignments:

                                                                                                                   NC
                             <<___________________________________________________________________________________ CS
               RF00292     1 GAaaUGAUcGACAcCUAGGCuGAUGUAAAGCCGUCGCAGAUGGACGUUGAUguCucAGCcGUGAAAaCAacaCUAUUUuacGCCu 85   
                             : +AUGA +GAC    AGGC+  UGU AA C G   CAGAU G  G UGAU+UC+     G  AAAAC AC +U   U  CGC  
  gi_545778205_gb_U000 53814 AUCAUGACUGACGAACAGGCCCGUGUGAAACUGGAACAGAUUGCUGCUGAUAUCAAGAGUGGUAAAACGACUUUUGCUGCCGCAG 53730
                             *******************************************************9966666688999999999999******** PP

                                       NC
                             _______>> CS
               RF00292    86 cGuCUGAUC 94   
                             CG+  GA :
  gi_545778205_gb_U000 53729 CGAAAGAGU 53721
                             ********* PP

RNAfold
>gi_545778205_gb_U000_253
CUCUUUCGCUGCGGCAGCAAAAGUCGUUUUACCACUCUUGAUAUCAGCAG
CAAUCUGUUCCAGUUUCACACGGGCCUGUUCGUCAGUCAUGAU
.......(((((.....(((.(((.((...)).))).)))......)))))...(((...(((.(((....))).))).....)))....... (-14.60)

Length sequence

: 93

Length match:

92