gi_545778205_gb_U000_88

cmsearch-Rfam

Family :

iscRS

Id:

RF01517

Type:

Cis-reg;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0075139 response to host iron concentration

Description:

not description

Score:

138.0

E-value:

1.1e-37

From sequence:

2661642

To sequence:

2661533

Alignments:

                                                                                                                 NC
                               :::::::[[[[[,(((((((((<<<<<<_______>>>>>>,,,<<-<<<____________>>>>>,))))))))),,<- CS
               RF01517       1 uAAAaAGaauuCAGaauCaGGCCGGggcGcuuaacgccCCGUaaaCaCGGUCGUACAUCcAGCCGGuuGCCuGauuCCUuG 81     
                               UAAAAAGAAUUCAGAAUCAGGCCGG:G:GCU+AA+:C:CCGUAAACACGGUCGUACAUCCAGCCGGU+GCCUGAUUCCUUG
  gi_545778205_gb_U000 2661642 UAAAAAGAAUUCAGAAUCAGGCCGGAGUGCUAAAUACUCCGUAAACACGGUCGUACAUCCAGCCGGUAGCCUGAUUCCUUG 2661562
                               ********************************************************************************* PP

                                                             NC
                               <<<______>>>->,,]]]]]:::::::: CS
               RF01517      82 CauUGAGUGauGUaCGGaguuUauAGAGC 110    
                               CAUUGAGUGAUGUACGGAGUUUAUAGAGC
  gi_545778205_gb_U000 2661561 CAUUGAGUGAUGUACGGAGUUUAUAGAGC 2661533
                               ***************************** PP

RNAfold
>gi_545778205_gb_U000_88
CUCUAUAAACUCCGUACAUCACUCAAUGCAAGGAAUCAGGCUACCGGCUG
GAUGUACGACCGUGUUUACGGAGUAUUUAGCACUCCGGCCUGAUUCUGAA
UUCUUUUUA
...............................(((((((((((....(((((..((((..((((....)))).))))))))).....)))))))))))............ (-28.80)

Length sequence

: 109

Length match:

108