JOB LAUNCHER:

Here, you can launch an analysis using StructRNAfinder and access the results in our servers. Before running an analysis, please read the following information:

• Your results will be available until 48 hrs after its creation, then will be deleted.
• All reports pages can be downloaded in a compressed file (tar.gz format) available in the "Files" section of your results html page.
• If you want to analyze a sequence(s) longer than 10Mbp, you have to use the stand-alone verion available in the DOWNLOAD section.

You can see an input example here

Fasta file :
Method : cmsearch cmscan

Filtering reporting thresholds :
E-value Score CM's gathering CM's noise CM's trusted

Search in: Both Positive Negative strand.
Report only best hit per sequence :


Note: Maximum sequence length 10 Mbp (including all sequences)

StructRNAfinder examples:
E. coli genome: (input|output)
E. coli known noncoding RNAs^*: (input|output)
Leishmania braziliensis genome: (input|output)

^*: extracted from Sætrom et. al, 2005.

CITATION

Arias-Carrasco, R., Vásquez-Morán, Y., Nakaya, H. I., & Maracaja-Coutinho, V. (2018). StructRNAfinder: an automated pipeline and web server for RNA families prediction. BMC Bioinformatics, 19(1), 55.