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    • Infernal RNAfold

    Sequence

    RNA family

    Id

    From_seq

    To_seq

    Score

    Evalue

    Score

    Struct

    Others-cis
    Ec_rtT, RtT RF00391 40 171 135.3 6.7e-32 -51.00

    Others-gene
    ffs Bacteria_small_SRP RF00169 33 129 65.5 1.4e-15 -32.00
    ssrS 6S RF00013 1 183 125.0 2e-28 -80.10
    gcvB, GcvB RF00022 1 205 176.8 5.6e-44 -61.00
    ssrA tmRNA RF00023 106 466 221.6 9.2e-66 -116.90

    antisense
    dicF DicF RF00039 2 53 75.8 1.8e-18 -16.10
    Ec_micF, MicF RF00033 81 174 114.1 7.5e-20 -18.90

    antitoxin
    QUAD1a_RyeC, SIB_RNA RF00113 1 116 114.7 6.2e-26 -55.70
    QUAD1b_RyeD, SIB_RNA RF00113 1 110 105.9 9.1e-24 -61.00
    QUAD1d_tp8, SIB_RNA RF00113 1 118 120.4 2.8e-27 -49.80
    tp8, SIB_RNA RF00113 1 116 116.6 2.2e-26 -49.80

    rRNA
    rrfA 5S_rRNA RF00001 3 118 75.5 1.1e-16 -46.40
    rrfB 5S_rRNA RF00001 3 118 74.8 1.6e-16 -48.10
    rrfC 5S_rRNA RF00001 3 118 77.2 3.8e-17 -49.10
    rrfD 5S_rRNA RF00001 3 118 77.2 3.8e-17 -49.10
    rrfE 5S_rRNA RF00001 3 118 74.8 1.6e-16 -48.10
    rrfF 5S_rRNA RF00001 3 119 68.1 8.4e-15 -45.60
    rrfG 5S_rRNA RF00001 3 118 77.2 3.8e-17 -49.10
    rrfH 5S_rRNA RF00001 3 118 77.2 3.8e-17 -49.10
    rrlA LSU_rRNA_bacteria RF02541 1 2905 2883.2 0 -1076.80
    rrlB LSU_rRNA_bacteria RF02541 1 2904 2889.8 0 -1082.50
    rrlC LSU_rRNA_bacteria RF02541 1 2906 2859.1 0 -1062.90
    rrlD LSU_rRNA_bacteria RF02541 1 2904 2855.1 0 -1068.90
    rrlE LSU_rRNA_bacteria RF02541 1 2904 2889.3 0 -1081.70
    rrlG LSU_rRNA_bacteria RF02541 1 2904 2889.8 0 -1082.50
    rrlH LSU_rRNA_bacteria RF02541 1 2904 2888.0 0 -1069.80
    rrsA SSU_rRNA_bacteria RF00177 1 1542 1577.3 0 -588.30
    rrsB SSU_rRNA_bacteria RF00177 1 1542 1577.3 0 -588.30
    rrsC SSU_rRNA_bacteria RF00177 1 1541 1571.1 0 -590.90
    rrsD SSU_rRNA_bacteria RF00177 1 1542 1579.7 0 -592.80
    rrsE SSU_rRNA_bacteria RF00177 1 1542 1577.3 0 -588.30
    rrsG SSU_rRNA_bacteria RF00177 1 1543 1567.6 0 -593.50
    rrsH SSU_rRNA_bacteria RF00177 1 1542 1573.3 0 -586.50

    ribozyme
    rnpB RNaseP_bact_a RF00010 1 377 312.6 3.5e-102 -160.40

    sRNA
    Ec_OxyS, OxyS RF00035 1 110 139.3 4.2e-32 -29.40
    sraB, SraB RF00077 1 169 210.6 7.1e-47 -41.80
    dsrA DsrA RF00014 1 85 90.2 1.3e-18 -31.90
    RygA, OmrA-B RF00079 12 91 77.0 5.8e-16 -29.10
    RyjA_SraL, sraL RF01408 4 144 151.2 1.6e-36 -44.70
    sraD, MicA RF00078 2 74 84.7 5.1e-15 -19.90
    sraE, OmrA-B RF00079 1 88 95.5 2e-20 -29.50
    sraL, sraL RF01408 1 140 144.0 1.1e-34 -44.10
    CsrC_RyiB_SraK_tpk2 CsrC RF00084 2 247 259.4 3.2e-84 -86.50
    sraK, CsrC RF00084 1 245 258.0 9.4e-84 -86.20
    tpk2, CsrC RF00084 1 201 199.1 3e-64 -55.60
    Ec_CsrB, CsrB RF00018 1 360 376.7 2.6e-111 -116.10
    spf Spot_42 RF00021 1 109 110.4 3.3e-24 -38.30
    Ec_RhyB, RyhB RF00057 30 90 71.8 2e-14 -17.40
    RyhB_SraI_FerA, RyhB RF00057 31 95 83.3 4.2e-17 -14.70
    sraI, RyhB RF00057 30 94 83.3 4.1e-17 -14.70
    tp1, ryfA RF00126 1 303 307.0 2.5e-87 -127.60
    tke1, GlmY_tke1 RF00128 2 149 144.4 7.4e-35 -42.80
    t44, t44 RF00127 49 135 83.0 1.6e-20 -28.80
    RydB_tpe7, rydB RF00118 1 61 79.2 7.6e-20 -14.90
    tpe7, rydB RF00118 3 63 79.2 5.6e-20 -14.90
    RybB, RybB RF00110 1 75 95.9 2.3e-21 -23.90
    RyhA_SraH, ArcZ RF00081 1 108 120.3 9e-30 -27.50
    sraH, ArcZ RF00081 1 108 120.3 8e-30 -27.50
    sraG, SraG RF00082 3 174 164.2 1.3e-32 -50.50
    RyiA_SraJ, GlmZ_SraJ RF00083 6 211 204.4 5.8e-54 -63.30
    sraJ, GlmZ_SraJ RF00083 1 172 173.3 1.6e-45 -40.50
    RyeB, SraC_RyeA RF00101 105 1 124.6 5.3e-30 -35.20
    sraC, SraC_RyeA RF00101 35 179 174.2 8.3e-43 -41.10
    Ec_RprA, RprA RF00034 1 106 110.6 3.3e-18 -24.80
    RyeE, CyaR_RyeE RF00112 1 86 99.7 8.2e-22 -19.50

    tRNA
    selC tRNA-Sec RF01852 1 91 81.7 2.2e-18 -41.40
    alaT tRNA RF00005 1 73 61.7 2.5e-14 -27.20
    alaU tRNA RF00005 1 73 61.7 2.5e-14 -27.20
    alaV tRNA RF00005 1 73 61.7 2.5e-14 -27.20
    alaW tRNA RF00005 1 73 59.8 8.2e-14 -24.40
    alaX tRNA RF00005 1 73 59.8 8.2e-14 -24.40
    argQ tRNA RF00005 1 74 66.4 1.2e-15 -24.50
    argU tRNA RF00005 1 74 70.9 6.5e-17 -26.00
    argV tRNA RF00005 1 74 66.4 1.2e-15 -24.50
    argW tRNA RF00005 1 72 61.8 2.3e-14 -21.40
    argX tRNA RF00005 1 74 62.2 1.8e-14 -30.80
    argY tRNA RF00005 1 74 66.4 1.2e-15 -24.50
    argZ tRNA RF00005 1 74 66.4 1.2e-15 -24.50
    asnT tRNA RF00005 1 73 71.3 5.1e-17 -24.30
    asnU tRNA RF00005 1 73 71.3 5.1e-17 -24.30
    asnV tRNA RF00005 1 73 71.3 5.1e-17 -24.30
    asnW tRNA RF00005 1 73 71.3 5.1e-17 -24.30
    aspT tRNA RF00005 1 74 66.0 1.6e-15 -23.70
    aspU tRNA RF00005 1 74 66.0 1.6e-15 -23.70
    aspV tRNA RF00005 1 74 66.0 1.6e-15 -23.70
    cysT tRNA RF00005 1 71 57.2 4.5e-13 -24.90
    glnU tRNA RF00005 1 72 62.7 1.2e-14 -26.80
    glnV tRNA RF00005 1 72 62.6 1.3e-14 -26.70
    glnW tRNA RF00005 1 72 62.7 1.2e-14 -26.80
    glnX tRNA RF00005 1 72 62.6 1.3e-14 -26.70
    gltT tRNA RF00005 1 73 59.8 8.4e-14 -28.40
    gltU tRNA RF00005 1 73 59.8 8.4e-14 -28.40
    gltV tRNA RF00005 1 73 59.8 8.4e-14 -28.40
    gltW tRNA RF00005 1 73 59.8 8.4e-14 -28.40
    glyT tRNA RF00005 1 72 64.1 5.3e-15 -23.00
    glyU tRNA RF00005 1 71 70.5 8.2e-17 -26.60
    glyV tRNA RF00005 1 73 66.6 1.1e-15 -28.50
    glyW tRNA RF00005 2 74 66.6 1.1e-15 -28.50
    glyX tRNA RF00005 1 73 66.6 1.1e-15 -28.50
    glyY tRNA RF00005 1 73 66.6 1.1e-15 -28.50
    hisR tRNA RF00005 2 74 68.2 3.8e-16 -23.30
    ileT tRNA RF00005 1 74 63.2 9.3e-15 -27.10
    ileU tRNA RF00005 1 74 63.2 9.3e-15 -27.10
    ileV tRNA RF00005 1 74 63.2 9.3e-15 -27.10
    ileX tRNA RF00005 1 73 72.2 2.8e-17 -31.20
    ileY tRNA RF00005 1 73 72.9 1.8e-17 -28.80
    leuP tRNA RF00005 1 84 49.9 5.6e-11 -26.80
    leuQ tRNA RF00005 1 84 49.9 5.5e-11 -27.50
    leuT tRNA RF00005 1 84 49.9 5.6e-11 -27.50
    leuU tRNA RF00005 1 84 54.2 3.6e-12 -34.50
    leuV tRNA RF00005 1 84 49.9 5.7e-11 -27.50
    leuW tRNA RF00005 1 82 58.5 2.2e-13 -32.80
    leuX tRNA RF00005 1 82 61.2 3.9e-14 -27.20
    leuZ tRNA RF00005 1 84 59.6 1.1e-13 -35.30
    lysQ tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    lysT tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    lysV tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    lysW tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    lysY tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    lysZ tRNA RF00005 1 73 78.5 4.9e-19 -23.30
    metT tRNA RF00005 1 74 69.2 2e-16 -18.90
    metU tRNA RF00005 1 74 69.2 2e-16 -18.90
    metV tRNA RF00005 1 74 60.9 4.3e-14 -29.40
    metW tRNA RF00005 1 74 60.9 4.3e-14 -29.40
    metY tRNA RF00005 1 74 60.8 4.4e-14 -29.40
    metZ tRNA RF00005 1 74 60.9 4.3e-14 -29.40
    pheU tRNA RF00005 1 73 67.0 8e-16 -29.30
    pheV tRNA RF00005 1 73 67.0 8e-16 -29.30
    proK tRNA RF00005 1 74 58.8 1.6e-13 -25.50
    proL tRNA RF00005 1 74 52.2 1.1e-11 -27.90
    proM tRNA RF00005 1 74 63.2 9.5e-15 -29.10
    serT tRNA RF00005 1 85 63.9 6.9e-15 -29.70
    serU tRNA RF00005 1 85 54.2 3.7e-12 -32.60
    serV tRNA RF00005 1 90 61.6 3.1e-14 -39.90
    serW tRNA RF00005 1 85 59.9 8.9e-14 -32.50
    serX tRNA RF00005 1 85 59.9 8.9e-14 -32.50
    thrT tRNA RF00005 1 73 72.7 2.1e-17 -25.70
    thrU tRNA RF00005 1 73 71.4 4.9e-17 -18.50
    thrV tRNA RF00005 1 73 68.9 2.5e-16 -26.30
    thrW tRNA RF00005 1 73 70.0 1.2e-16 -21.80
    trpT tRNA RF00005 1 73 64.7 3.5e-15 -25.50
    tyrT tRNA RF00005 1 82 60.1 7.8e-14 -25.80
    tyrU tRNA RF00005 1 82 60.1 7.8e-14 -25.80
    tyrV tRNA RF00005 1 82 60.1 7.8e-14 -25.80
    valT tRNA RF00005 1 73 62.5 1.5e-14 -29.60
    valU tRNA RF00005 1 73 62.5 1.5e-14 -29.60
    valV tRNA RF00005 1 74 66.4 1.2e-15 -22.60
    valW tRNA RF00005 1 74 65.9 1.7e-15 -27.60
    valX tRNA RF00005 1 73 62.5 1.5e-14 -29.60
    valY tRNA RF00005 1 73 62.5 1.5e-14 -29.60
    valZ tRNA RF00005 1 73 62.5 1.5e-14 -29.60